YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237901, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237901, gi|....

Description	E-value	Query Range	Subject Range
gi\|52784220, gi\|... - gi\|52784220\|ref\|YP_090049.1\| hypothetical protein BLi00398 [Bacillus licheniformis ATCC 14580], gi\|5...	323.0	[0..2]	[230..4]
gi\|46143847 - gi\|46143847\|ref\|ZP_00204582.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|165875837, gi... - gi\|165975736\|ref\|YP_001651329.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu... gi\|126207768, gi... - gi\|126207768\|ref\|YP_001052993.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu...	323.0	[0..1]	[230..9]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	320.0	[0..1]	[230..14]
POTA_HAEDU - Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus ducreyi GN=potA PE=3 SV=1 POTA_HAEDU - Spermidine/putrescine import ATP-binding protein PotA OS=Haemophilus ducreyi (strain 35000HP / ATCC ...	320.0	[0..1]	[230..9]
gi\|222450603, gi... - gi\|222526724\|ref\|YP_002571195.1\| ABC transporter related [Chloroflexus sp. Y-400-fl], gi\|222450603\|g... gi\|163670063, gi... - gi\|76261358\|ref\|ZP_00768971.1\| ABC transporter related [Chloroflexus aurantiacus J-10-fl], gi\|761637...	320.0	[0..1]	[226..10]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	319.0	[0..2]	[230..4]
POTA_HAES1 - Spermidine/putrescine import ATP-binding protein PotA OS=Haemophilus somnus (strain 129Pt) GN=potA P... gi\|46156542, gi\|... - gi\|46156542\|ref\|ZP_00204732.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	319.0	[0..1]	[230..10]
gi\|238717671, gi... - gi\|77961080\|ref\|ZP_00824927.1\| COG1126: ABC-type polar amino acid transport system, ATPase component...	319.0	[0..1]	[229..13]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	318.0	[0..2]	[230..23]
gi\|77978777, gi\|... - gi\|77978777\|ref\|ZP_00834202.1\| COG1126: ABC-type polar amino acid transport system, ATPase component...	318.0	[0..1]	[229..13]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIVKDLHVY YGLIEAVKGI DFKVETGHIV SLIGSNGAGK TSTLNALLNS VKRTGEVNFL  60
   61 GYDTKRHLTH TLVQKGIALV PEGRRVFINL SVEENLKIGA FNNAENYEHL REQMYKLFPR 120
  121 LASKKHALAG TLSGGEAQML AISRALMSEP KLLMLDEPSL GLAPKIVGEV FDIIVRLKEE 180
  181 GITILLVEQN AYSALKISDY AYVLENGRIV MENEAKNLIG DDEIRKKYLG L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	1ji0A
Description:	Branched chain aminoacid ABC transporter
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
P-P-bond-hydrolysis-driven transmembrane transporter activity	6.58863529263644	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	6.58067278719409	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	6.57974651657836	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	6.57922174989907	bayes_pls_golite062009
primary active transmembrane transporter activity	6.57807080367604	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.48406410175216	bayes_pls_golite062009
active transmembrane transporter activity	6.48154954364331	bayes_pls_golite062009
pyrophosphatase activity	6.40467109535527	bayes_pls_golite062009
ATPase activity, coupled	6.40151534181487	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.38373914253885	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.38247436082206	bayes_pls_golite062009
ATPase activity	6.30019941712404	bayes_pls_golite062009
heme transporter activity	4.82479229680991	bayes_pls_golite062009
peptide transporter activity	4.7442815698413	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	4.71935767060308	bayes_pls_golite062009
peptide-transporting ATPase activity	4.63590351019108	bayes_pls_golite062009
hydrolase activity	4.60957912556603	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.35344629015015	bayes_pls_golite062009
ribonucleotide binding	3.79710854336074	bayes_pls_golite062009
purine ribonucleotide binding	3.7956093726294	bayes_pls_golite062009
ATP binding	3.78352939926331	bayes_pls_golite062009
purine nucleotide binding	3.74676466237472	bayes_pls_golite062009
adenyl ribonucleotide binding	3.73153142187361	bayes_pls_golite062009
nucleotide binding	3.71970404557651	bayes_pls_golite062009
adenyl nucleotide binding	3.66815111788068	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	3.57926427233638	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.4837867129694	bayes_pls_golite062009
ion transmembrane transporter activity	3.35436118751376	bayes_pls_golite062009
phosphate transmembrane-transporting ATPase activity	3.20894563245332	bayes_pls_golite062009
phosphate transmembrane transporter activity	3.14373643903738	bayes_pls_golite062009
anion transmembrane transporter activity	3.13913638619234	bayes_pls_golite062009
transporter activity	3.10463051760206	bayes_pls_golite062009
cation transmembrane transporter activity	3.08390071341252	bayes_pls_golite062009
iron ion transmembrane transporter activity	3.05511942104215	bayes_pls_golite062009
transmembrane transporter activity	2.95886887664984	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.9271291809464	bayes_pls_golite062009
branched-chain aliphatic amino acid transmembrane transporter activity	2.88795687640992	bayes_pls_golite062009
amine-transporting ATPase activity	2.69529191205818	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.67957846350199	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	2.67815672695824	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.63419811368692	bayes_pls_golite062009
oligopeptide-transporting ATPase activity	2.57684108006744	bayes_pls_golite062009
cofactor transporter activity	2.41442360192472	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.40292717311506	bayes_pls_golite062009
amine transmembrane transporter activity	2.29486577878686	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.26365379756656	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.04724145339382	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.04724145339382	bayes_pls_golite062009
lipopolysaccharide-transporting ATPase activity	1.92426772294655	bayes_pls_golite062009
lipopolysaccharide transmembrane transporter activity	1.92426772294655	bayes_pls_golite062009
substrate-specific transporter activity	1.91091452720653	bayes_pls_golite062009
polysaccharide transmembrane transporter activity	1.87680514870933	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.82177108193332	bayes_pls_golite062009
organic anion transmembrane transporter activity	1.76999970080179	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.59627719545436	bayes_pls_golite062009
phosphonate transmembrane transporter activity	1.40269234722336	bayes_pls_golite062009
binding	1.33437370519308	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.23799860254751	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.1220946941463	bayes_pls_golite062009
GTPase activity	1.05341575831759	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
cation channel activity	0.997064416395892	bayes_pls_golite062009
potassium channel activity	0.843657228494419	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.767424210804186	bayes_pls_golite062009
voltage-gated cation channel activity	0.688632087597536	bayes_pls_golite062009
voltage-gated channel activity	0.562664200036023	bayes_pls_golite062009
voltage-gated ion channel activity	0.559798751382976	bayes_pls_golite062009
protein transporter activity	0.498432226280822	bayes_pls_golite062009
L-aspartate transmembrane transporter activity	0.483217496906356	bayes_pls_golite062009
drug transmembrane transporter activity	0.46842047319323	bayes_pls_golite062009
kinase activity	0.465336251595641	bayes_pls_golite062009
guanyl nucleotide binding	0.373350189511011	bayes_pls_golite062009
guanyl ribonucleotide binding	0.363151049799385	bayes_pls_golite062009
	0.3586311431823	bayes_pls_golite062009
GTP binding	0.343113158179248	bayes_pls_golite062009
gated channel activity	0.299411774392227	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	0.219473333671469	bayes_pls_golite062009
cholesterol transporter activity	0.20165628585345	bayes_pls_golite062009
protein kinase activity	0.194459978373898	bayes_pls_golite062009
ion channel activity	0.154779598791225	bayes_pls_golite062009
amino acid-transporting ATPase activity	0.147644650870465	bayes_pls_golite062009
passive transmembrane transporter activity	0.134817721656507	bayes_pls_golite062009
channel activity	0.134817721656507	bayes_pls_golite062009
substrate-specific channel activity	0.126911677161968	bayes_pls_golite062009
nucleic acid binding	0.12562572048621	bayes_pls_golite062009
cation-transporting ATPase activity	0.0536898657672154	bayes_pls_golite062009
motor activity	0.0492636236578701	bayes_pls_golite062009
oligopeptide transporter activity	0.0268154844251251	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: