YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985440, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985440, gi|....

Description	E-value	Query Range	Subject Range
gi\|222450603, gi... - gi\|222526724\|ref\|YP_002571195.1\| ABC transporter related [Chloroflexus sp. Y-400-fl], gi\|222450603\|g... gi\|163670063, gi... - gi\|76261358\|ref\|ZP_00768971.1\| ABC transporter related [Chloroflexus aurantiacus J-10-fl], gi\|761637...	357.0	[0..1]	[240..10]
gi\|56420511, gi\|... - gi\|56420511\|ref\|YP_147829.1\| glutamine ABC transporter ATP-binding protein [Geobacillus kaustophilus...	356.0	[0..1]	[240..1]
GLNQ_GEOSE - Glutamine transport ATP-binding protein GlnQ OS=Geobacillus stearothermophilus GN=glnQ PE=2 SV=1	356.0	[0..1]	[240..1]
gi\|11528330 - gi\|11528330\|gb\|AAG37225.1\|AF298223_3 glutamine ABC transporter, ATP-binding subunit [Methanococcus m... gi\|45047352, gi\|... - gi\|45357792\|ref\|NP_987349.1\| amino acid ABC transporter ATP-binding protein [Methanococcus maripalud...	354.0	[0..1]	[240..1]
gi\|194467497, gi... - gi\|92090286\|ref\|ZP_01275165.1\| ABC transporter related [Lactobacillus reuteri 100-23], gi\|91802944\|g...	354.0	[0..2]	[240..7]
gi\|83595860 - gi\|83595860\|gb\|ABC25222.1\| amino acid ABC transporter, ATP-binding protein [uncultured marine bacter...	354.0	[0..2]	[240..14]
gi\|255519730 - gi\|255519730\|ref\|ZP_05386967.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog... gi\|217963587, gi... - gi\|217963587\|ref\|YP_002349265.1\| glutamine transport ATP-binding protein GlnQ [Listeria monocytogene... gi\|46881755, gi\|... - gi\|46908484\|ref\|YP_014873.1\| amino acid ABC transporter, ATP-binding protein [Listeria monocytogenes... gi\|47017176, gi\|... - gi\|47094447\|ref\|ZP_00232128.1\| amino acid ABC transporter, ATP-binding protein [Listeria monocytogen... gi\|153168161, gi... - gi\|153168161\|ref\|ZP_01928171.1\| amino acid ABC transporter, ATP-binding protein [Listeria monocytoge... gi\|153175516, gi... - gi\|254826860\|ref\|ZP_05231547.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog... gi\|226224859, gi... - gi\|226224859\|ref\|YP_002758966.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocyto... gi\|254931636, gi... - gi\|254931636\|ref\|ZP_05264995.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog... gi\|254853373 - gi\|254853373\|ref\|ZP_05242721.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog... gi\|254825185 - gi\|254825185\|ref\|ZP_05230186.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog... gi\|254992060 - gi\|254992060\|ref\|ZP_05274250.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog... gi\|254878132 - gi\|254878132\|ref\|ZP_05250842.1\| amino acid ABC transporter (ATP-binding protein) [Listeria monocytog...	354.0	[0..1]	[240..1]
gi\|148530372, gi... - gi\|89091775\|ref\|ZP_01164743.1\| ATPas [Lactobacillus reuteri JCM 1112], gi\|89078406\|gb\|EAR57769.1\| AT... gi\|227070503, gi... - gi\|227364410\|ref\|ZP_03848500.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Lacto... gi\|227531705, gi... - gi\|227531705\|ref\|ZP_03961754.1\| ABC superfamily ATP binding cassette transporter, ABC protein [Lacto...	354.0	[0..2]	[240..7]
gi\|82724967, gi\|... - gi\|82747099\|ref\|ZP_00909599.1\| ATPas [Clostridium beijerincki NCIMB 8052], gi\|82724967\|gb\|EAP59716.1...	354.0	[0..1]	[240..1]
gi\|25297261, gi\|... - pir\|\|AC1356 amino acid ABC transporter (ATP-binding protein) homolog lmo2251 [imported] - Listeria m... gi\|47013922, gi\|... - gi\|47097703\|ref\|ZP_00235211.1\| amino acid ABC transporter, ATP-binding protein [Listeria monocytogen... gi\|153185045, gi... - gi\|254899047\|ref\|ZP_05258971.1\| hypothetical protein LmonJ_04524 [Listeria monocytogenes J0161], gi\|... gi\|254831312, gi... - gi\|254831312\|ref\|ZP_05235967.1\| hypothetical protein Lmon1_08137 [Listeria monocytogenes 10403S], gi... gi\|254912812, gi... - gi\|254912812\|ref\|ZP_05262824.1\| hypothetical protein LmonJ2_08446 [Listeria monocytogenes J2818], gi... gi\|224500949 - gi\|224500949\|ref\|ZP_03669256.1\| hypothetical protein LmonFR_00270 [Listeria monocytogenes FSL R2-561... gi\|153180261, gi... - gi\|254937139\|ref\|ZP_05268836.1\| hypothetical protein LmonF6_08426 [Listeria monocytogenes F6900], gi... gi\|224498995 - gi\|224498995\|ref\|ZP_03667344.1\| hypothetical protein LmonF1_04548 [Listeria monocytogenes Finland 19... gi\|16804290 - gi\|16804290\|ref\|NP_465775.1\| hypothetical protein lmo2251 [Listeria monocytogenes EGD-e]	354.0	[0..1]	[240..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEVRDVSKN FGGLRALDRV TFDVKEGEKV VIIGPSGSGK STLLRSLNKL EQIDTGRIVV  60
   61 DGIDLYGQGT DINKLREEVG MVFQSFNLFP HKTVLQNITL AQCVVRQRSA SEATEKAMGL 120
  121 LRKVGLEEKA GAYPAKLSGG QQQRVAIARA LAMDPKLMLF DEPTSALDPE MIGEVLDVMK 180
  181 SLAREGMTMV VVTHEMGFAR EVADRVIFMD AGRIVEEGTP EHFFRNPTHE RTKLFLSQIL 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	1b0uA
Description:	ATP-binding subunit of the histidine permease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
P-P-bond-hydrolysis-driven transmembrane transporter activity	6.58863529263644	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	6.58067278719409	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	6.57974651657836	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	6.57922174989907	bayes_pls_golite062009
primary active transmembrane transporter activity	6.57807080367604	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.48406410175216	bayes_pls_golite062009
active transmembrane transporter activity	6.48154954364331	bayes_pls_golite062009
pyrophosphatase activity	6.40467109535527	bayes_pls_golite062009
ATPase activity, coupled	6.40151534181487	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.38373914253885	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.38247436082206	bayes_pls_golite062009
ATPase activity	6.30019941712404	bayes_pls_golite062009
peptide transporter activity	4.7442815698413	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	4.71935767060308	bayes_pls_golite062009
peptide-transporting ATPase activity	4.63590351019108	bayes_pls_golite062009
hydrolase activity	4.60957912556603	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.35344629015015	bayes_pls_golite062009
oligopeptide-transporting ATPase activity	4.09365342567844	bayes_pls_golite062009
ribonucleotide binding	3.79710854336074	bayes_pls_golite062009
purine ribonucleotide binding	3.7956093726294	bayes_pls_golite062009
ATP binding	3.78352939926331	bayes_pls_golite062009
purine nucleotide binding	3.74676466237472	bayes_pls_golite062009
adenyl ribonucleotide binding	3.73153142187361	bayes_pls_golite062009
nucleotide binding	3.71970404557651	bayes_pls_golite062009
adenyl nucleotide binding	3.66815111788068	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	3.57926427233638	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.4837867129694	bayes_pls_golite062009
ion transmembrane transporter activity	3.35436118751376	bayes_pls_golite062009
phosphate transmembrane-transporting ATPase activity	3.20894563245332	bayes_pls_golite062009
phosphate transmembrane transporter activity	3.14373643903738	bayes_pls_golite062009
anion transmembrane transporter activity	3.13913638619234	bayes_pls_golite062009
transporter activity	3.10463051760206	bayes_pls_golite062009
cation transmembrane transporter activity	3.08390071341252	bayes_pls_golite062009
iron ion transmembrane transporter activity	3.05511942104215	bayes_pls_golite062009
transmembrane transporter activity	2.95886887664984	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.9271291809464	bayes_pls_golite062009
branched-chain aliphatic amino acid transmembrane transporter activity	2.88795687640992	bayes_pls_golite062009
amine-transporting ATPase activity	2.69529191205818	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.67957846350199	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	2.67815672695824	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.63419811368692	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.40292717311506	bayes_pls_golite062009
amine transmembrane transporter activity	2.29486577878686	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.26365379756656	bayes_pls_golite062009
oligopeptide transporter activity	2.05580564974083	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.04724145339382	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.04724145339382	bayes_pls_golite062009
substrate-specific transporter activity	1.91091452720653	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.82177108193332	bayes_pls_golite062009
organic anion transmembrane transporter activity	1.76999970080179	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.59627719545436	bayes_pls_golite062009
sugar transmembrane transporter activity	1.57734504779864	bayes_pls_golite062009
phosphonate transmembrane transporter activity	1.40269234722336	bayes_pls_golite062009
carbohydrate-transporting ATPase activity	1.37859980472197	bayes_pls_golite062009
binding	1.33437370519308	bayes_pls_golite062009
carbohydrate-importing ATPase activity	1.27327946933978	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.23799860254751	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.1220946941463	bayes_pls_golite062009
GTPase activity	1.05341575831759	bayes_pls_golite062009
dipeptide transporter activity	1.01130176523309	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
cation channel activity	0.997064416395892	bayes_pls_golite062009
potassium channel activity	0.843657228494419	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.767424210804186	bayes_pls_golite062009
voltage-gated cation channel activity	0.688632087597536	bayes_pls_golite062009
voltage-gated channel activity	0.562664200036023	bayes_pls_golite062009
voltage-gated ion channel activity	0.559798751382976	bayes_pls_golite062009
protein transporter activity	0.498432226280822	bayes_pls_golite062009
L-aspartate transmembrane transporter activity	0.483217496906356	bayes_pls_golite062009
drug transmembrane transporter activity	0.46842047319323	bayes_pls_golite062009
kinase activity	0.465336251595641	bayes_pls_golite062009
guanyl nucleotide binding	0.373350189511011	bayes_pls_golite062009
guanyl ribonucleotide binding	0.363151049799385	bayes_pls_golite062009
	0.3586311431823	bayes_pls_golite062009
GTP binding	0.343113158179248	bayes_pls_golite062009
glucoside transmembrane transporter activity	0.31429820040527	bayes_pls_golite062009
maltose transmembrane transporter activity	0.309333293394255	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	0.309333293394255	bayes_pls_golite062009
disaccharide transmembrane transporter activity	0.309333293394255	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	0.304521826432814	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	0.304521826432814	bayes_pls_golite062009
maltose-transporting ATPase activity	0.304521826432814	bayes_pls_golite062009
gated channel activity	0.299411774392227	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	0.219473333671469	bayes_pls_golite062009
cholesterol transporter activity	0.20165628585345	bayes_pls_golite062009
protein kinase activity	0.194459978373898	bayes_pls_golite062009
vitamin transporter activity	0.162731691286377	bayes_pls_golite062009
ion channel activity	0.154779598791225	bayes_pls_golite062009
amino acid-transporting ATPase activity	0.147644650870465	bayes_pls_golite062009
passive transmembrane transporter activity	0.134817721656507	bayes_pls_golite062009
channel activity	0.134817721656507	bayes_pls_golite062009
substrate-specific channel activity	0.126911677161968	bayes_pls_golite062009
nucleic acid binding	0.12562572048621	bayes_pls_golite062009
cation-transporting ATPase activity	0.0536898657672154	bayes_pls_golite062009
motor activity	0.0492636236578701	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: