From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.813185734979] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
DNA helicase complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
Ino80 complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
Swr1 complex | 5.3053E-6 | 2 | 15 | 2 | 6292 |
nuclear chromatin | 1.3278E-4 | 2 | 73 | 2 | 6292 |
chromatin | 1.4784E-4 | 2 | 77 | 2 | 6292 |
chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
H4/H2A histone acetyltransferase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
NuA4 histone acetyltransferase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ATP-dependent 5'-3' DNA helicase activity | 1.0611E-6 | 2 | 7 | 2 | 6292 |
5'-3' DNA helicase activity | 1.4147E-6 | 2 | 8 | 2 | 6292 |
ATP-dependent DNA helicase activity | 7.7306E-6 | 2 | 18 | 2 | 6292 |
DNA helicase activity | 2.8346E-5 | 2 | 34 | 2 | 6292 |
ATP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
purine NTP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
DNA-dependent ATPase activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |
histone acetyltransferase activity | 5.3968E-3 | 2 | 17 | 1 | 6292 |
lysine N-acetyltransferase activity | 5.3968E-3 | 2 | 17 | 1 | 6292 |