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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone acetyltransferase complex 1.2704E-6 4 44 3 6292
nucleoplasm part 2.2664E-4 4 245 3 6292
nucleoplasm 2.8316E-4 4 264 3 6292
nuclear lumen 1.404E-3 4 453 3 6292
organelle lumen 4.2376E-3 4 660 3 6292
intracellular organelle lumen 4.2376E-3 4 660 3 6292
membrane-enclosed lumen 5.0309E-3 4 700 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone acetylation 6.8555E-7 4 36 3 6292
protein amino acid acetylation 1.4558E-6 4 46 3 6292
chromatin silencing at telomere 2.5132E-6 4 55 3 6292
protein amino acid acylation 3.1128E-6 4 59 3 6292
covalent chromatin modification 1.0471E-5 4 88 3 6292
histone modification 1.0471E-5 4 88 3 6292
negative regulation of gene expression, epigenetic 1.5407E-5 4 100 3 6292
chromatin silencing 1.5407E-5 4 100 3 6292
gene silencing 1.5407E-5 4 100 3 6292
regulation of gene expression, epigenetic 1.5407E-5 4 100 3 6292
negative regulation of transcription, DNA-dependent 5.987E-5 4 157 3 6292
negative regulation of RNA metabolic process 6.1021E-5 4 158 3 6292
negative regulation of gene expression 6.8238E-5 4 164 3 6292
negative regulation of transcription 6.8238E-5 4 164 3 6292
chromatin modification 7.3351E-5 4 168 3 6292
negative regulation of macromolecule biosynthetic process 8.2896E-5 4 175 3 6292
negative regulation of nitrogen compound metabolic process 9.0195E-5 4 180 3 6292
negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.0195E-5 4 180 3 6292
negative regulation of biosynthetic process 1.0438E-4 4 189 3 6292
negative regulation of cellular biosynthetic process 1.0438E-4 4 189 3 6292
negative regulation of macromolecule metabolic process 1.0942E-4 4 192 3 6292
chromatin organization 1.2926E-4 4 203 3 6292
negative regulation of cellular metabolic process 1.4102E-4 4 209 3 6292
negative regulation of metabolic process 1.4305E-4 4 210 3 6292
chromatin assembly or disassembly 1.7912E-4 4 35 2 6292
negative regulation of cellular process 2.4072E-4 4 250 3 6292
negative regulation of biological process 2.4943E-4 4 253 3 6292
post-translational protein modification 6.9425E-4 4 357 3 6292
regulation of transcription, DNA-dependent 7.0003E-4 4 358 3 6292
regulation of RNA metabolic process 7.294E-4 4 363 3 6292
regulation of transcription 8.6159E-4 4 384 3 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.084E-3 4 415 3 6292
regulation of nitrogen compound metabolic process 1.0917E-3 4 416 3 6292
regulation of gene expression 1.3321E-3 4 445 3 6292
regulation of macromolecule biosynthetic process 1.4316E-3 4 456 3 6292
regulation of cellular biosynthetic process 1.5848E-3 4 472 3 6292
regulation of biosynthetic process 1.5947E-3 4 473 3 6292
regulation of macromolecule metabolic process 1.7483E-3 4 488 3 6292
protein modification process 1.8668E-3 4 499 3 6292
transcription, DNA-dependent 1.9112E-3 4 503 3 6292
RNA biosynthetic process 1.9676E-3 4 508 3 6292
regulation of primary metabolic process 2.0368E-3 4 514 3 6292
regulation of cellular metabolic process 2.3038E-3 4 536 3 6292
regulation of metabolic process 2.4454E-3 4 547 3 6292
transcription 2.5116E-3 4 552 3 6292
chromosome organization 2.5518E-3 4 555 3 6292
macromolecule modification 2.7453E-3 4 569 3 6292
regulation of cellular process 7.309E-3 4 796 3 6292
regulation of biological process 8.0789E-3 4 824 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone binding 3.5042E-8 4 14 3 6292
binding 1.7823E-3 4 1294 4 6292
protein binding 3.3984E-3 4 612 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle