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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

CCR4-NOT complex 2.44E-14 5 14 5 6292
transcription factor complex 1.5869E-10 5 71 5 6292
CCR4-NOT core complex 1.3479E-8 5 8 3 6292
nucleoplasm part 8.6048E-8 5 245 5 6292
nucleoplasm 1.2538E-7 5 264 5 6292
nuclear lumen 1.895E-6 5 453 5 6292
organelle lumen 1.2528E-5 5 660 5 6292
intracellular organelle lumen 1.2528E-5 5 660 5 6292
membrane-enclosed lumen 1.6827E-5 5 700 5 6292
nuclear part 1.6432E-4 5 1103 5 6292
protein complex 1.913E-4 5 1137 5 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
nucleus 3.5796E-3 5 2041 5 6292
organelle part 6.2578E-3 5 2282 5 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292
Cdc73/Paf1 complex 6.3431E-3 5 8 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear-transcribed mRNA poly(A) tail shortening 1.3479E-8 5 8 3 6292
regulation of transcription from RNA polymerase II promoter 5.9875E-8 5 228 5 6292
transcription from RNA polymerase II promoter 4.1586E-7 5 335 5 6292
regulation of transcription, DNA-dependent 5.8074E-7 5 358 5 6292
regulation of RNA metabolic process 6.2268E-7 5 363 5 6292
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 7.0086E-7 5 27 3 6292
regulation of transcription 8.2613E-7 5 384 5 6292
mRNA 3'-end processing 1.076E-6 5 31 3 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.2203E-6 5 415 5 6292
regulation of nitrogen compound metabolic process 1.2352E-6 5 416 5 6292
regulation of gene expression 1.7328E-6 5 445 5 6292
regulation of macromolecule biosynthetic process 1.9589E-6 5 456 5 6292
nuclear-transcribed mRNA catabolic process 2.016E-6 5 38 3 6292
RNA elongation from RNA polymerase II promoter 2.1835E-6 5 39 3 6292
regulation of cellular biosynthetic process 2.3293E-6 5 472 5 6292
regulation of biosynthetic process 2.3542E-6 5 473 5 6292
RNA 3'-end processing 2.7408E-6 5 42 3 6292
regulation of macromolecule metabolic process 2.7537E-6 5 488 5 6292
transcription, DNA-dependent 3.2057E-6 5 503 5 6292
RNA biosynthetic process 3.3689E-6 5 508 5 6292
RNA elongation 3.3854E-6 5 45 3 6292
regulation of primary metabolic process 3.5735E-6 5 514 5 6292
regulation of cellular metabolic process 4.4101E-6 5 536 5 6292
regulation of metabolic process 4.8834E-6 5 547 5 6292
transcription 5.1116E-6 5 552 5 6292
mRNA catabolic process 1.2428E-5 5 69 3 6292
RNA catabolic process 1.9438E-5 5 80 3 6292
regulation of cellular process 3.2051E-5 5 796 5 6292
regulation of biological process 3.8116E-5 5 824 5 6292
RNA metabolic process 7.942E-5 5 954 5 6292
mRNA processing 1.4416E-4 5 156 3 6292
cellular macromolecule biosynthetic process 2.3732E-4 5 1187 5 6292
macromolecule biosynthetic process 2.3933E-4 5 1189 5 6292
biological regulation 2.6452E-4 5 1213 5 6292
gene expression 3.5034E-4 5 1283 5 6292
mRNA metabolic process 3.6377E-4 5 213 3 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
cellular macromolecule catabolic process 6.9359E-4 5 265 3 6292
macromolecule catabolic process 9.4145E-4 5 294 3 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular biosynthetic process 9.5349E-4 5 1567 5 6292
biosynthetic process 1.065E-3 5 1602 5 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
RNA processing 1.9946E-3 5 380 3 6292
cellular catabolic process 2.5772E-3 5 415 3 6292
catabolic process 4.3165E-3 5 496 3 6292
traversing start control point of mitotic cell cycle 4.7604E-3 5 6 1 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

3'-5'-exoribonuclease activity 4.2475E-7 5 23 3 6292
exoribonuclease activity 6.2313E-7 5 26 3 6292
exoribonuclease activity, producing 5'-phosphomonoesters 6.2313E-7 5 26 3 6292
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 1.4314E-6 5 34 3 6292
3'-5' exonuclease activity 1.5652E-6 5 35 3 6292
exonuclease activity 3.6208E-6 5 46 3 6292
ribonuclease activity 1.2571E-4 5 149 3 6292
nuclease activity 2.9737E-4 5 199 3 6292
hydrolase activity, acting on ester bonds 1.4541E-3 5 341 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle