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Protein Overview: SSL2

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SSL2 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..297] deduced N/A No confident structure predictions are available.
2 View Details [298..570] PSI-BLAST 94.39794 Putative DEAD box RNA helicase
3 View Details [571..717] PSI-BLAST 94.39794 Putative DEAD box RNA helicase
4 View Details [718..843] PSI-BLAST 10.30103 Nucleotide excision repair enzyme UvrB

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3
Term Confidence Notes
  • general RNA polymerase II transcription factor activity
  • 5.67074370996647 bayes_pls_golite062009
  • transcription regulator activity
  • 5.55329976718261 bayes_pls_golite062009
  • DNA binding
  • 5.08959163553491 bayes_pls_golite062009
  • nucleic acid binding
  • 4.99681957904233 bayes_pls_golite062009
  • transcription factor activity
  • 4.33152142980289 bayes_pls_golite062009
  • transcription activator activity
  • 3.70589483230587 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 3.58179858678904 bayes_pls_golite062009
  • binding
  • 3.52874320222492 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 2.7405324052133 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 2.60738445921725 bayes_pls_golite062009
  • transcription repressor activity
  • 2.22485867684613 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 1.82365519759474 bayes_pls_golite062009
  • RNA polymerase activity
  • 1.82365519759474 bayes_pls_golite062009
  • transcription elongation regulator activity
  • 1.81270943531115 bayes_pls_golite062009
  • protein binding
  • 1.80415286835431 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.38449475025903 bayes_pls_golite062009
  • RNA binding
  • 0.992043085614693 bayes_pls_golite062009
  • transcription factor binding
  • 0.85714789329232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 0.66743181561551 bayes_pls_golite062009
  • transferase activity
  • 0.382878181629158 bayes_pls_golite062009
  • double-stranded DNA binding
  • 0.349632742873003 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 0.237727660028553 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
  • 0.23177057841536 bayes_pls_golite062009
  • hydrolase activity
  • 0.140191206949582 bayes_pls_golite062009
  • positive transcription elongation factor activity
  • 0.13524243942225 bayes_pls_golite062009
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle