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Protein Overview: SPAC17H9.02

General Information:
Name(s) found: SPAC17H9.02 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • ATP-dependent RNA helicase Mtr4-like [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1030 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    TRAMP complex [ISSLink to PubMed article]
    Biological Process: mRNA export from nucleus [ISSLink to PubMed article]
    tRNA catabolic process [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process [ISSLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    ATP-dependent RNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENSTDSKN FQFSEGSRES SNDELKVLLR DTETKEDEKS SFSNSEEESI IENLSDSSVN  60
   61 KEYAKNSLKL SDAVSESKYL NPLLKDKRHD RSFALHKVVV PDDYDYIPLN KHIPSDPPAK 120
  121 TYPFELDPFQ STAIKCVERM ESVLVSAHTS AGKTVIAEYA IAQALKNRQR VIYTSPIKSL 180
  181 SNQKYRELLS EFGDVGLMTG DVSINPSASC LIMTTEILRA MLYKNSEIMH EIAWVIFDEV 240
  241 HYMRDKDRGV VWEETLILLP DAIRFIFLSA TLPNALQFAR WISEIHKQPC HVVYTDYRPT 300
  301 PLQHFIYPQG ADGIYMLVDE KNKFKTENFK KVLEVLDHST RQENYSKSSK KVKKSSSLER 360
  361 IINMVLSNRY DPIIVFCFSK KECEINAHQF GKLDLNDTEN KELVTEIFDS AINQLSEEDR 420
  421 GLRQFEEMRS LLLRGIGIHH SGLLPILKEL VEILFQEGLV RILFATETFS IGLNMPARTV 480
  481 LFTKAQKFSG NNFRWLTSGE YMQMSGRAGR RGIDTKGLSI VILDQSIDEQ AARCLMNGQA 540
  541 DVLNSAFHLS YGMILNLMRI EEISPEDILK KSFYQFQNME SLPLIKEELM QLKNEETSIN 600
  601 IPNETAVKEF HDLKLQLEKY GEEIQKVMTH PDNCLPYLQS GRLIQIKLGG IIFPWGVLVN 660
  661 VIKREFDPNT REQVAPHETY VLDVLLPISS NSMSNHKVNP SILVPPRPNE TPLYEIVSVL 720
  721 LTAVCNISSI RIYMPRELNS NESKLRAYRR VNEVIEEFKE IPYLDPLEHM HIESSTLSLS 780
  781 LRKLEILEPK LFDSPYYKDS KHRAEYHEFR KKLNLRAQIK DISTKITNTE AIIQLRELKI 840
  841 RQRVLRRLGF CTLENVIDIK GRVACEITSG DELLLVELIF QGFFNQMPPE EIAAALSCFV 900
  901 YEDKSEVSTL NLKEPFKKMY LTIIEAAKRI ATVSLESKLQ FNESDYLHQF KPDIMEPVSL 960
  961 WINGASFQEI CIVSKLYEGS IVRTFRRLDE LLKQLEHAAI VLGNNELKEK SVLTEQKLHR1020
 1021 DIIFSASLYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] deduced N/A No confident structure predictions are available.
    2 View Details [102..842] PSI-BLAST 38.39794 No description for 2p6rA was found.
    3 View Details [843..1030] PSI-BLAST 52.221849 No description for 2q0zX was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  2.95079405147356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.87427509025394 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.85499564954033 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.85178667290149 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • transporter activity
    		•  2.58140740499725 bayes_pls_golite062009
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.39695871109024 bayes_pls_golite062009
  • ATPase activity
    		•  2.39535714892224 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.18396165590908 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.42791449104435 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41477043612798 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.39335733374328 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.36724390116598 bayes_pls_golite062009
  • motor activity
    		•  1.34881124154297 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.29730375126024 bayes_pls_golite062009
  • protein binding
    		•  1.22129154759482 bayes_pls_golite062009
  • DNA binding
    		•  1.11699929651302 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.989226939888218 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.906554174337376 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.712344060953362 bayes_pls_golite062009
  • helicase activity
    		•  0.6191010101321 bayes_pls_golite062009
  • ligase activity
    		•  0.491120745447751 bayes_pls_golite062009
    		• 0.442119153778711 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.434775387083003 bayes_pls_golite062009
  • ATP binding
    		•  0.41092997612902 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.385813421701492 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.377870145186619 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.355466224802969 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.32730260506261 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.294474570607914 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.282352478532746 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.220608508617331 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.219533217661421 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.219157471322311 bayes_pls_golite062009
  • GTPase activity
    		•  0.105546189348878 bayes_pls_golite062009
  • microfilament motor activity
    		•  0.10236059675512 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0434163635422169 bayes_pls_golite062009
  • protein transporter activity
    		•  0.0397092337273124 bayes_pls_golite062009
  • guanyl nucleotide binding
    		•  0.0289841199143713 bayes_pls_golite062009
  • RNA binding
    		•  0.0261282189186349 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0254369227200564 bayes_pls_golite062009
  • guanyl ribonucleotide binding
    		•  0.0187537754688351 bayes_pls_golite062009
  • GTP binding
    		•  0.0171298013679982 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.65544526722793 bayes_pls_golite062009
  • protein binding
    		•  2.55331587515144 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  1.94268098951022 bayes_pls_golite062009
  • transporter activity
    		•  1.94143938635343 bayes_pls_golite062009
  • cation channel activity
    		•  1.84843298243351 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  1.82318341284761 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  1.81839281588293 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  1.81742923395177 bayes_pls_golite062009
  • potassium channel activity
    		•  1.81257297770622 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.81071289575882 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.76281327097473 bayes_pls_golite062009
  • ion channel activity
    		•  1.70663166559662 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.70274134661261 bayes_pls_golite062009
  • gated channel activity
    		•  1.68818168029572 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.66007375521419 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.65899897018442 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  1.65208263051952 bayes_pls_golite062009
  • channel activity
    		•  1.63616928632474 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  1.63616928632474 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.52401313013637 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  1.32367033892557 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  1.32367033892557 bayes_pls_golite062009
  • actin binding
    		•  1.32092343528021 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.24469346535998 bayes_pls_golite062009
  • hydrolase activity
    		•  0.524040950977088 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  0.43450134854604 bayes_pls_golite062009
  • structural molecule activity
    		•  0.10665287466831 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle