Protein Overview: MRP13

General Information:
Name(s) found:	MRP13 / YGR084C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|6321521\|ref\|NP_011598.1\| Mitochondrial ribosomal protein of the small subunit; Mrp13p [Saccharomyces cerevisiae] [NCBI NR] pir\|\|R6BY13 ribosomal protein MRP13 precursor, mitochondrial - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1710796\|sp\|P12686.2\|RT13_YEAST RecName: Full=37S ribosomal protein MRP13, mitochondrial; AltName: Full=YmS-A; Flags: Precursor [NCBI NR] gi\|1323121\|emb\|CAA97086.1\| MRP13 [Saccharomyces cerevisiae] [NCBI NR] 37S ribosomal protein MRP13, mitochondrial OS=Saccharomyces cerevisiae GN=MRP13 PE=1 SV=2 [Swiss-Prot] MRP13 Mitochondrial ribosomal protein, small subunit [mips] Mitochondrial ribosomal protein of the small subunit [SGD] MRP13, Chr VII from 647117-648136, reverse complement [yeast_orfs2] Chr VII from 647117-648136, reverse complement [yeastorf3.fasta] Chr VII from 647124-648143, reverse complement [yeastorf4.fasta] Chr VII from 648143-647124, reverse complement [yeastorf5.fasta] (P12686) 40S ribosomal protein S13, mitochondrial precursor [4932.FASTACCERV.txt] MRP13 SGDID:S0003316, Chr VII from 648144-647125, reverse complement, Verified ORF [yeastflysequest.fasta] MRP13 SGDID:S0003316, Chr VII from 648146-647127, reverse complement, Verified ORF [10112005cervSGD.fasta] Mitochondrial ribosomal protein of the small subunit [Saccharomyces cerevisiae]gi\|1323121\|emb\|CAA97086.1\| MRP13 [Saccharomyces cerevisiae]gi\|2144786\|pir\|\|R6BY13 ribosomal protein MRP13 precursor, mitochondrial - yeast (Saccharomyces cerevisiae)gi\|1710 [nrdb_11152004_Chlamydomonas] (P12686) 40S ribosomal protein S13, mitochondrial precursor (YmS-A) [cerv4932.FASTAC] MRP13 SGDID:S000003316, Chr VII from 648146-647127, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] Mitochondrial ribosomal protein of the small subunit; Mrp13p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] 40S ribosomal protein S13, mitochondrial precursor (YmS-A) [nr-271106-contam.fasta] MRP13 [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] 37S ribosomal protein MRP13, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRP13 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] MRP13 SGDID:S000003316, Chr VII from 648142-647123, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [yeast-030211-contam.fasta] MRP13 SGDID:S000003316, Chr VII from 648142-647123, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [20141208_orf_trans.fasta] YGR084C SGDID:S000003316, Chr VII from 648142-647123, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	339 amino acids
Gene Ontology:
Cellular Component:	mitochondrion [IDA] mitochondrial small ribosomal subunit [IDA ]
Biological Process:	translation [IDA]
Molecular Function:	structural constituent of ribosome [IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTITVVINE GPILLIRALH RATTNKKMFR STVWRRFAST GEIAKAKLDE FLIYHKTDAK  60
   61 LKPFIYRPKN AQILLTKDIR DPKTREPLQP RPPVKPLSKQ TLNDFIYSVE PNSTELLDWF 120
  121 KEWTGTSIRK RAIWTYISPI HVQKMLTASF FKIGKYAHMV GLLYGIEHKF LKAQNPSVFD 180
  181 IEHFFNTNIM CALHRNRLKD YKDAEIAQRK LQVAWKKVLN RKNNTGLANI LVATLGRQIG 240
  241 FTPELTGLQP VDISLPDIPN SSSGAELKDL LSKYEGIYLI ARTLLDIDQH NAQYLELQEF 300
  301 IRQYQNALSE SSDPYDTHLK ALGLLETPPP QESTEKEEK

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Riffle et al. (2010) (Unpublished Data)		EHD3 MRP1 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PUS7 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7
View Details	(MIPS) Mewes HW, et al. (2004)		MRP1 MRP10 MRP13 MRP17 MRP2 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 VAR1 YMR31
View Details	Krogan NJ, et al. (2006)		FIG2 GIC1 MRP13 YIL067C
View Details	Gavin AC, et al. (2006)		EHD3 MRP1 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM19 RSM22 RSM23 RSM25 RSM27 RSM7
View Details	Gavin AC, et al. (2002)		BEM2 CCM1 ECM16 EHD3 FYV4 GEP3 HSC82 MRP1 MRP10 MRP13 MRP17 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS5 MRPS8 MRPS9 NAM9 PAP2 PET123 PSD2 PUS7 RIX1 RSM10 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 TIF4631 UBP10 UTP20 UTP22
View Details	Qiu et al. (2008)		EHD3 FYV4 IMG1 IMG2 MAM33 MRP1 MRP10 MRP13 MRP17 MRP2 MRP20 MRP21 MRP4 MRP51 MRPL1 MRPL13 MRPL15 MRPL16 MRPL17 MRPL19 MRPL20 MRPL22 MRPL25 MRPL28 MRPL31 MRPL32 MRPL33 MRPL35 MRPL39 MRPL49 MRPL50 MRPL51 MRPL8 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 RPS25B RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM28 RSM7 SWS2 VAR1 YML6 YMR31

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	BOI1	Sample bob1 (2nd set) from october 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	IRE1	MRP13	1	Unpublished Fields Lab Data
View Screen	SUI1	MRP13	1	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	MRP13	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..339]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2