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Protein Overview: VID30

General Information:
Name(s) found: VID30 / YGL227W [SGD]
Description(s) found:
Found 25 descriptions.
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  • Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); binds FBPase; shifts the balance of nitrogen metabolism toward glutamate production; localizes to the nucleus and the cytoplasm [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 958 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [IMPLink to PubMed article]
    negative regulation of gluconeogenesis [IMPLink to PubMed article]
    regulation of nitrogen utilization [IMPLink to PubMed article]
    vacuolar protein catabolic process [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYMDDVDR EFINCLFPSY LLQQPVAYDL WILYLQHRKL FHKLKNTNLI NADENPTGVG  60
   61 MGRTKLTALT RKEIWSKLMN LGVLGTISFE AVNDDYLIQV YKYFYPDVND FTLRFGVKDS 120
  121 NKNSVRVMKA SSDMRKNAQE LLEPVLSERE MALNSNTSLE NDRNDDDDDD DDDDDDDDDD 180
  181 DDDDDESDLE SLEGEVDTDT DDNNEGDGSD NHEEGGEEGS RGADADVSSA QQRAERVADP 240
  241 WIYQRSRSAI NIETESRNLW DTSDKNSGLQ YYPPDQSPSS SFSSPRVSSG NDKNDNEATN 300
  301 VLSNSGSKKK NSMIPDIYKI LGYFLPSRWQ AQPNNSLQLS QDGITHLQPN PDYHSYMTYE 360
  361 RSSASSASTR NRLRTSFENS GKVDFAVTWA NKSLPDNKLT IFYYEIKVLS VTSTESAENS 420
  421 NIVIGYKLVE NELMEATTKK SVSRSSVAGS SSSLGGSNNM SSNRVPSTSF TMEGTQRRDY 480
  481 IYEGGVSAMS LNVDGSINKC QKYGFDLNVF GYCGFDGLIT NSTEQSKEYA KPFGRDDVIG 540
  541 CGINFIDGSI FFTKNGIHLG NAFTDLNDLE FVPYVALRPG NSIKTNFGLN EDFVFDIIGY 600
  601 QDKWKSLAYE HICRGRQMDV SIEEFDSDES EEDETENGPE ENKSTNVNED LMDIDQEDGA 660
  661 AGNKDTKKLN DEKDNNLKFL LGEDNRFIDG KLVRPDVNNI NNLSVDDGSL PNTLNVMIND 720
  721 YLIHEGLVDV AKGFLKDLQK DAVNVNGQHS ESKDVIRHNE RQIMKEERMV KIRQELRYLI 780
  781 NKGQISKCIN YIDNEIPDLL KNNLELVFEL KLANYLVMIK KSSSKDDDEI ENLILKGQEL 840
  841 SNEFIYDTKI PQSLRDRFSG QLSNVSALLA YSNPLVEAPK EISGYLSDEY LQERLFQVSN 900
  901 NTILTFLHKD SECALENVIS NTRAMLSTLL EYNAFGSTNS SDPRYYKAIN FDEDVLNL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) FYV10 GID7 GID8 RMD5 VID24 VID28 VID30 YDL176W
    View Details Krogan NJ, et al. (2006) FYV10 GID7 GID8 RMD5 VID24 VID28 VID30 YDL176W
    View Details Ho Y, et al. (2002) CCT2 CCT3 CTF19 FYV10 GID7 GID8 HXT7 MOH1 RMD5 TFP1 UME1 VID28 VID30

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run SMC5 No Comments Hazbun TR, et al. (2003)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data VID30 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..47]
    [270..349]    		 ORFEUS 10.3 No description for 1l8mA was found.
    2 View Details [48..120] ORFEUS 10.3 No description for 1l8mA was found.
    3 View Details [121..199] ORFEUS 10.3 No description for 1l8mA was found.
    4 View Details [200..269] ORFEUS 10.3 No description for 1l8mA was found.
    5 View Details [350..420] deduced N/A Confident ab initio structure predictions are available.
    6 View Details [421..672] MSA 36.103997 View MSA. No confident structure predictions are available.
    7 View Details [673..958] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle