Protein Overview: YMR31

General Information:
Name(s) found:	YMR31 / YFR049W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|836804\|dbj\|BAA09288.1\| mithochondrial ribosomal protein YMR-31 precursor [Saccharomyces cerevisiae] [NCBI NR] pir\|\|JQ0368 ribosomal protein YMR31, mitochondrial - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|4828\|emb\|CAA35577.1\| YMR31 [Saccharomyces cerevisiae] [NCBI NR] gi\|45270840\|gb\|AAS56801.1\| YFR049W [Saccharomyces cerevisiae] [NCBI NR] gi\|14318574\|ref\|NP_116707.1\| Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36; Ymr31p [Saccharomyces cerevisiae] [NCBI NR] gi\|133141\|sp\|P19955.1\|RT31_YEAST RecName: Full=37S ribosomal protein YMR-31, mitochondrial; Flags: Precursor [NCBI NR] 37S ribosomal protein YMR-31, mitochondrial OS=Saccharomyces cerevisiae GN=YMR31 PE=1 SV=1 [Swiss-Prot] YMR31 Mitochondrial ribosomal protein, small subunit [mips] Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36 [SGD] YMR31, Chr VI from 248510-248881 [yeast_orfs2] Chr VI from 248510-248881 [yeastorf3.fasta] (P19955) 40S ribosomal protein YMR-31, mitochondrial precursor [4932.FASTACCERV.txt] YMR31 SGDID:S0001945, Chr VI from 248510-248881, Verified ORF [yeastflysequest.fasta] Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36 [Saccharomyces cerevisiae]gi\|4828\|emb\|CAA35577.1\| YMR31 [Saccharomyces cerevisiae]gi\|45270840\|gb\|AAS56801.1\| YFR049W [Saccharomyces cer [nrdb_11152004_Chlamydomonas] YMR31 SGDID:S000001945, Chr VI from 248510-248881, Verified ORF, "Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36; Ymr31p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] YMR31 [Saccharomyces cerevisiae] [nr-271106-contam.fasta] mithochondrial ribosomal protein YMR-31 precursor [Saccharomyces cerevisiae] [nr-271106-contam.fasta] 40S ribosomal protein YMR-31, mitochondrial precursor [nr-271106-contam.fasta] YFR049W [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] 37S ribosomal protein YMR-31, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR31 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YMR31 SGDID:S000001945, Chr VI from 248523-248894, Genome Release 64-1-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36" [yeast-030211-contam.fasta] YMR31 SGDID:S000001945, Chr VI from 248523-248894, Genome Release 64-2-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit; has similarity to human mitochondrial ribosomal protein MRP-S36" [20141208_orf_trans.fasta] TR4895\|c0_g1_i1\|g.3248 ORF TR4895\|c0_g1_i1\|g.3248 TR4895\|c0_g1_i1\|m.3248 type:complete len:124 (+) TR4895\|c0_g1_i1:185-556(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta] YFR049W SGDID:S000001945, Chr VI from 248523-248894, Genome Release 64-1-1, Verified ORF, "Mitochondrial ribosomal protein of the small subunit, has similarity to human mitochondrial ribosomal protein MRP-S36" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta] asmbl_9448\|g.6840 ORF asmbl_9448\|g.6840 asmbl_9448\|m.6840 type:complete len:124 (+) asmbl_9448:181-552(+) [DBVPG6044_Trinity_v2_2_0_PASA_6May2016-contam.fasta] ID=asmbl_9548\|g.5855 ORF ID=asmbl_9548\|g.5855 ID=asmbl_9548\|m.5855 type:complete len:124 (+) ID=asmbl_9548:181-552(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	123 amino acids
Gene Ontology:
Cellular Component:	mitochondrion [IDA] mitochondrial small ribosomal subunit [TAS]
Biological Process:	translation [TAS]
Molecular Function:	structural constituent of ribosome [TAS]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MIATPIRLAK SAYEPMIKFV GTRHPLVKHA TEVVVHPCAT NGMLPGSKEC IPVSKFMENY 60 61 KPFRVVPIKH SANAGLSSSK TSVFVNRPLQ KDELASIFEL PARFRYKPIN EHELESINSG 120 121 GAW

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Riffle et al. (2010) (Unpublished Data)		KGD1 KGD2 LPD1 YMR31
View Details	(MIPS) Mewes HW, et al. (2004)		MRP1 MRP10 MRP13 MRP17 MRP2 MRP21 MRP4 MRP51 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 PPE1 RSM10 RSM18 RSM19 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 VAR1 YMR31
View Details	Krogan NJ, et al. (2006)		LPD1 YMR31
View Details	Gavin AC, et al. (2006)		KGD1 KGD2 YMR31
View Details	Gavin AC, et al. (2002)		CLU1 KAP123 KGD1 KGD2 LEA1 LPD1 SAM1 YMR31
View Details	Qiu et al. (2008)		EHD3 MAM33 MRP1 MRP10 MRP13 MRP17 MRP21 MRP4 MRP49 MRP51 MRP7 MRPL1 MRPL10 MRPL16 MRPL17 MRPL19 MRPL22 MRPL23 MRPL25 MRPL27 MRPL31 MRPL33 MRPL35 MRPL36 MRPL38 MRPL39 MRPL49 MRPL6 MRPL8 MRPL9 MRPS12 MRPS16 MRPS17 MRPS18 MRPS28 MRPS35 MRPS5 MRPS8 MRPS9 NAM9 PET123 RSM10 RSM18 RSM22 RSM23 RSM24 RSM25 RSM26 RSM27 RSM7 SWS2 VAR1 YML6 YMR31

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	ZDS1	Sample 3 - cpn + atp, from june 2005	McCusker D, et al (2007)
View Run	BOI1	Sample bob1 (2nd set) from october 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	YMR31	Huh WK, et al. (2003)
View Data	YMR31	Huh WK, et al. (2003)

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..123]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle