YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPCC550.03c
Organism: Schizosaccharomyces pombe
Length: 1213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC550.03c.

Description E-value Query
Range		 Subject
Range
gi|114600242 - gi|114600242|ref|XP_001145794.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2 [Pan...
 714.0 [0..194] [1213..49]
gi|6633995, gi|2... - gi|6633995|dbj|BAA06124.2| KIAA0052 protein [Homo sapiens], sp|P42285|K052_HUMAN Protein KIAA0052
 713.0 [0..187] [1213..46]
gi|73949523 - gi|73949523|ref|XP_849676.1| PREDICTED: similar to Superkiller viralicidic activity 2-like 2 isoform...
 713.0 [0..181] [1213..42]
SK2L2_MOUSE - Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=1 SV=1
gi|71681012 - gi|71681012|gb|AAH99802.1| RGD1305984 protein [Rattus norvegicus]
 712.0 [0..153] [1213..6]
gi|149059353, gi... - gi|77539760|ref|NP_001029265.1| superkiller viralicidic activity 2-like 2 [Rattus norvegicus], gi|14...
 711.0 [0..187] [1213..42]
gi|60654395 - gi|60654395|gb|AAX29888.1| KIAA0052 protein [synthetic construct]
 711.0 [0..187] [1213..42]

Back

Predicted Domain #1
Region A:
Residues: [1-200] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLVDAIN EVAVSNKDKI ELDGIKDDSF DGHLSITEAT YDVDTFLKPS PALSKDWIRK  60
   61 LQKKWDREIT YKGLYEYPET LARTQIRFQR HGLEGKIMGY KEVPELIEDL NSKNSSSFLR 120
  121 KPSSKNEFVR GSTSNIPFLA DDSDVDAIAG EPSVKMALYG EDGLLQVPPG FSRGLSMTAT 180
  181 STTDNLNDEF DPEKWDTKKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [201-260] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSSNRNFVTI HELNEHLKNV NSKHSEIDDL LPDKRSIVSL PPSTLNLHKQ PDYAHVVDSS  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.69897
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #3
Region A:
Residues: [261-523] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APIENFQQLV PEMALDFPFE LDNFQKEAIY HLEMGDSVFV AAHTSAGKTV VAEYAIALAQ  60
   61 KHMTKAIYTS PIKALSNQKF RDFKHKFEDV GILTGDVQVN PEGSCLLMTT EILRSMLYRG 120
  121 ADLIRDVEFV IFDEVHYVND LERGVVWEEV IIMLPPHVTL ILLSATVPNT KEFASWVGRT 180
  181 KKKNIYVIST LKRPVPLEHY LWVKQNMFKI VDQHGRFLMD GYKSANDALK KPDKPVIAKD 240
  241 NKNSARGRGA ARGRGVQTNM MRG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2p6rA
Description: No description for 2p6rA was found.

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
transporter activity 2.58140740499725 bayes_pls_golite062009
hydrolase activity 2.55157966585974 bayes_pls_golite062009
transmembrane transporter activity 2.39695871109024 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
nucleic acid binding 2.11222585187695 bayes_pls_golite062009
DNA binding 1.7904783386531 bayes_pls_golite062009
transcription regulator activity 1.68903321260301 bayes_pls_golite062009
structural constituent of ribosome 1.47858140861683 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
motor activity 1.34881124154297 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
1.15596552553878 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.906554174337376 bayes_pls_golite062009
structural molecule activity 0.86514677273731 bayes_pls_golite062009
RNA binding 0.715902454627085 bayes_pls_golite062009
ribonuclease activity 0.712344060953362 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
transcription factor activity 0.603758349693077 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ligase activity 0.417681194526243 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
ion transmembrane transporter activity 0.355466224802969 bayes_pls_golite062009
microtubule motor activity 0.32730260506261 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
guanyl nucleotide binding 0.296406132096546 bayes_pls_golite062009
GTP binding 0.295705904888768 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
translation regulator activity 0.29096092258568 bayes_pls_golite062009
guanyl ribonucleotide binding 0.29028316917561 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.274994961137851 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
microfilament motor activity 0.10236059675512 bayes_pls_golite062009
protein transporter activity 0.0397092337273124 bayes_pls_golite062009
cation transmembrane transporter activity 0.0254369227200564 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [524-588] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGSAKSVERR DANTWVHLIG HLHKQNLLPV IVFVFSKKRC EEYVDTLTNR DLNNHQEKSE  60
   61 VHVVI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2p6nA
Description: No description for 2p6nA was found.

Predicted Domain #5
Region A:
Residues: [589-824] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKAVARLKKE DRLLPQIGRM REMLSRGLAV HHGGLLPIIK EIVEILFQRG LVKVLFATET  60
   61 FAMGVNMPAK SVVFSGTQKH DGRNFRDLLP GEYTQCSGRA GRRGLDVTGT VIILSRSELP 120
  121 DTASLRHMIM GPSSKLISQF RLTYNMILNL LRVETLRIED MIKRSFSENV NQTLVPQHEE 180
  181 KIKSFEEKLS ALKKEMSDVD LKEIKSCLLS SESFKEYTKK MHFRAITTAN GKRIFK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 1c4oA
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
transporter activity 2.58140740499725 bayes_pls_golite062009
hydrolase activity 2.55157966585974 bayes_pls_golite062009
transmembrane transporter activity 2.39695871109024 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
nucleic acid binding 2.11222585187695 bayes_pls_golite062009
DNA binding 1.7904783386531 bayes_pls_golite062009
transcription regulator activity 1.68903321260301 bayes_pls_golite062009
structural constituent of ribosome 1.47858140861683 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
motor activity 1.34881124154297 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
1.15596552553878 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.906554174337376 bayes_pls_golite062009
structural molecule activity 0.86514677273731 bayes_pls_golite062009
RNA binding 0.715902454627085 bayes_pls_golite062009
ribonuclease activity 0.712344060953362 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
transcription factor activity 0.603758349693077 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ligase activity 0.417681194526243 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
ion transmembrane transporter activity 0.355466224802969 bayes_pls_golite062009
microtubule motor activity 0.32730260506261 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
guanyl nucleotide binding 0.296406132096546 bayes_pls_golite062009
GTP binding 0.295705904888768 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
translation regulator activity 0.29096092258568 bayes_pls_golite062009
guanyl ribonucleotide binding 0.29028316917561 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.274994961137851 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
microfilament motor activity 0.10236059675512 bayes_pls_golite062009
protein transporter activity 0.0397092337273124 bayes_pls_golite062009
cation transmembrane transporter activity 0.0254369227200564 bayes_pls_golite062009

Predicted Domain #6
Region A:
Residues: [825-1126] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGRVIVFQQL DFTRTVGVLL GTSIRTNASD CTLEVAYLNP QNNLKRPSDL LAFADAFNDV  60
   61 YDNAIFDESN QFKYGLINLS GIERVCNTIL RIDSGGIRDR RGGAFRKLSE QFASIKKFSD 120
  121 LLFEEVNWSK VRDFEFCEAF EKRNFLQNKL SGNPIISTPN FLTHFALAYQ EYELESNIDN 180
  181 LSSYISDQNL ELLPDYEQRI KVLQELGYID AERTVLLKGR VACEINSTSE LVLTELILEN 240
  241 SLADFSCEET IALLSAFVFD EKTEVEPTIS PHLQKGKEMI LSVAEKVNQI QEHYQVLYFN 300
  301 EG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 2q0zX
Description: No description for 2q0zX was found.

Predicted functions:

Term Confidence Notes
RNA-dependent ATPase activity 3.40791872038512 bayes_pls_golite062009
ATP-dependent RNA helicase activity 3.40070584403887 bayes_pls_golite062009
RNA helicase activity 3.25446655280881 bayes_pls_golite062009
3.01111645480862 bayes_pls_golite062009
binding 2.65544526722793 bayes_pls_golite062009
protein binding 2.55331587515144 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.00003070639929 bayes_pls_golite062009
ATPase activity, coupled 1.96155856210682 bayes_pls_golite062009
voltage-gated cation channel activity 1.94268098951022 bayes_pls_golite062009
transporter activity 1.94143938635343 bayes_pls_golite062009
ATPase activity 1.94063929259701 bayes_pls_golite062009
pyrophosphatase activity 1.93031967085303 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.91231918357992 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.90999409453671 bayes_pls_golite062009
nucleic acid binding 1.89711816247783 bayes_pls_golite062009
helicase activity 1.87693598354249 bayes_pls_golite062009
purine NTP-dependent helicase activity 1.87127651162653 bayes_pls_golite062009
ATP-dependent helicase activity 1.87127651162653 bayes_pls_golite062009
cation channel activity 1.84843298243351 bayes_pls_golite062009
voltage-gated potassium channel activity 1.82318341284761 bayes_pls_golite062009
voltage-gated ion channel activity 1.81839281588293 bayes_pls_golite062009
voltage-gated channel activity 1.81742923395177 bayes_pls_golite062009
potassium channel activity 1.81257297770622 bayes_pls_golite062009
transmembrane transporter activity 1.81071289575882 bayes_pls_golite062009
substrate-specific transporter activity 1.76281327097473 bayes_pls_golite062009
ion channel activity 1.70663166559662 bayes_pls_golite062009
cation transmembrane transporter activity 1.70274134661261 bayes_pls_golite062009
gated channel activity 1.68818168029572 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.66007375521419 bayes_pls_golite062009
ion transmembrane transporter activity 1.65899897018442 bayes_pls_golite062009
substrate-specific channel activity 1.65208263051952 bayes_pls_golite062009
passive transmembrane transporter activity 1.63616928632474 bayes_pls_golite062009
channel activity 1.63616928632474 bayes_pls_golite062009
structural molecule activity 1.59238444054212 bayes_pls_golite062009
metal ion transmembrane transporter activity 1.52401313013637 bayes_pls_golite062009
ligand-gated ion channel activity 1.32367033892557 bayes_pls_golite062009
ligand-gated channel activity 1.32367033892557 bayes_pls_golite062009
actin binding 1.32092343528021 bayes_pls_golite062009
cytoskeletal protein binding 1.24469346535998 bayes_pls_golite062009
hydrolase activity 0.524040950977088 bayes_pls_golite062009
inward rectifier potassium channel activity 0.43450134854604 bayes_pls_golite062009

Predicted Domain #7
Region A:
Residues: [1127-1213] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDFESQPRFG LMEVCYEWAR GMSFNRITDL TDVLEGSIVR TIIRLDEVLR ECRGAARVVG  60
   61 DSSMYTKMEE CQNLIRRNIV FCPSLYM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle