YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.
Notes: From the published set of core protein complex predictions.
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

EKC/KEOPS protein complex 2.0243E-9 3 9 3 6292
nuclear chromatin 3.9536E-4 3 73 2 6292
chromatin 4.4E-4 3 77 2 6292
nuclear chromosome part 2.6674E-3 3 190 2 6292
nuclear chromosome 3.8286E-3 3 228 2 6292
chromosomal part 4.1335E-3 3 237 2 6292
chromosome 5.5058E-3 3 274 2 6292
protein complex 5.8881E-3 3 1137 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

positive regulation of transcription from RNA polymerase II promoter 2.2962E-6 3 84 3 6292
positive regulation of transcription, DNA-dependent 4.2619E-6 3 103 3 6292
positive regulation of RNA metabolic process 4.7832E-6 3 107 3 6292
positive regulation of gene expression 5.4926E-6 3 112 3 6292
positive regulation of transcription 5.4926E-6 3 112 3 6292
positive regulation of nitrogen compound metabolic process 6.4323E-6 3 118 3 6292
positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 6.4323E-6 3 118 3 6292
positive regulation of macromolecule biosynthetic process 6.4323E-6 3 118 3 6292
positive regulation of biosynthetic process 6.9399E-6 3 121 3 6292
positive regulation of cellular biosynthetic process 6.9399E-6 3 121 3 6292
positive regulation of macromolecule metabolic process 7.8441E-6 3 126 3 6292
positive regulation of metabolic process 8.4226E-6 3 129 3 6292
positive regulation of cellular metabolic process 8.4226E-6 3 129 3 6292
positive regulation of cellular process 9.8814E-6 3 136 3 6292
positive regulation of biological process 1.0103E-5 3 137 3 6292
regulation of transcription from RNA polymerase II promoter 4.698E-5 3 228 3 6292
anatomical structure homeostasis 9.2976E-5 3 286 3 6292
telomere organization 9.2976E-5 3 286 3 6292
telomere maintenance 9.2976E-5 3 286 3 6292
transcription from RNA polymerase II promoter 1.4965E-4 3 335 3 6292
regulation of transcription, DNA-dependent 1.8274E-4 3 358 3 6292
regulation of RNA metabolic process 1.9053E-4 3 363 3 6292
regulation of transcription 2.2565E-4 3 384 3 6292
homeostatic process 2.7078E-4 3 408 3 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.85E-4 3 415 3 6292
regulation of nitrogen compound metabolic process 2.8707E-4 3 416 3 6292
regulation of gene expression 3.5155E-4 3 445 3 6292
regulation of macromolecule biosynthetic process 3.7833E-4 3 456 3 6292
regulation of cellular biosynthetic process 4.1966E-4 3 472 3 6292
regulation of biosynthetic process 4.2234E-4 3 473 3 6292
regulation of macromolecule metabolic process 4.639E-4 3 488 3 6292
transcription, DNA-dependent 5.081E-4 3 503 3 6292
RNA biosynthetic process 5.2344E-4 3 508 3 6292
regulation of primary metabolic process 5.4224E-4 3 514 3 6292
regulation of cellular metabolic process 6.1504E-4 3 536 3 6292
regulation of metabolic process 6.5376E-4 3 547 3 6292
regulation of biological quality 6.6823E-4 3 551 3 6292
transcription 6.7188E-4 3 552 3 6292
chromosome organization 6.8292E-4 3 555 3 6292
DNA metabolic process 7.9998E-4 3 585 3 6292
regulation of cellular process 2.0181E-3 3 796 3 6292
regulation of biological process 2.2389E-3 3 824 3 6292
RNA metabolic process 3.4763E-3 3 954 3 6292
response to water deprivation 3.8101E-3 3 8 1 6292
response to desiccation 3.8101E-3 3 8 1 6292
response to water 5.7116E-3 3 12 1 6292
organelle organization 5.734E-3 3 1127 3 6292
mannoprotein biosynthetic process 6.1865E-3 3 13 1 6292
mannoprotein metabolic process 6.1865E-3 3 13 1 6292
cell wall glycoprotein biosynthetic process 6.1865E-3 3 13 1 6292
cell wall mannoprotein biosynthetic process 6.1865E-3 3 13 1 6292
cellular macromolecule biosynthetic process 6.7003E-3 3 1187 3 6292
macromolecule biosynthetic process 6.7343E-3 3 1189 3 6292
biological regulation 7.1507E-3 3 1213 3 6292
gene expression 8.4626E-3 3 1283 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin DNA binding 4.2416E-6 3 8 2 6292
chromatin binding 7.9771E-5 3 33 2 6292
structure-specific DNA binding 1.4276E-4 3 44 2 6292
DNA binding 4.8144E-3 3 256 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle