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View Protein Complex Details

Complex Overview

From Publication: Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.
Notes: From the published set of core protein complex predictions.
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription elongation factor complex 8.5713E-12 7 23 5 6292
nuclear lumen 8.8765E-7 7 453 6 6292
nucleoplasm part 1.6939E-6 7 245 5 6292
nucleoplasm 2.4553E-6 7 264 5 6292
organelle lumen 8.3215E-6 7 660 6 6292
intracellular organelle lumen 8.3215E-6 7 660 6 6292
membrane-enclosed lumen 1.1789E-5 7 700 6 6292
nuclear part 1.7083E-4 7 1103 6 6292
nucleus 3.7528E-4 7 2041 7 6292
protein complex 2.9048E-3 7 1137 5 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

tRNA modification 1.4573E-12 7 51 6 6292
RNA modification 1.0582E-11 7 70 6 6292
tRNA processing 3.0409E-11 7 83 6 6292
tRNA metabolic process 2.9279E-10 7 120 6 6292
ncRNA processing 1.0114E-8 7 215 6 6292
regulation of transcription from RNA polymerase II promoter 1.4416E-8 7 228 6 6292
ncRNA metabolic process 2.9672E-8 7 257 6 6292
transcription from RNA polymerase II promoter 1.4594E-7 7 335 6 6292
regulation of transcription, DNA-dependent 2.1729E-7 7 358 6 6292
regulation of RNA metabolic process 2.3612E-7 7 363 6 6292
RNA processing 3.1056E-7 7 380 6 6292
regulation of transcription 3.3064E-7 7 384 6 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 5.2602E-7 7 415 6 6292
regulation of nitrogen compound metabolic process 5.3364E-7 7 416 6 6292
regulation of gene expression 7.9809E-7 7 445 6 6292
regulation of macromolecule biosynthetic process 9.2331E-7 7 456 6 6292
regulation of cellular biosynthetic process 1.1342E-6 7 472 6 6292
regulation of biosynthetic process 1.1486E-6 7 473 6 6292
regulation of macromolecule metabolic process 1.3836E-6 7 488 6 6292
transcription, DNA-dependent 1.657E-6 7 503 6 6292
RNA biosynthetic process 1.7576E-6 7 508 6 6292
regulation of primary metabolic process 1.8849E-6 7 514 6 6292
regulation of cellular metabolic process 2.4189E-6 7 536 6 6292
regulation of metabolic process 2.7296E-6 7 547 6 6292
transcription 2.8813E-6 7 552 6 6292
macromolecule modification 3.4506E-6 7 569 6 6292
regulation of cellular process 2.5187E-5 7 796 6 6292
regulation of biological process 3.088E-5 7 824 6 6292
RNA metabolic process 7.3069E-5 7 954 6 6292
cellular macromolecule biosynthetic process 2.6203E-4 7 1187 6 6292
macromolecule biosynthetic process 2.6461E-4 7 1189 6 6292
biological regulation 2.9723E-4 7 1213 6 6292
gene expression 4.1171E-4 7 1283 6 6292
nucleic acid metabolic process 7.2556E-4 7 1415 6 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.3005E-3 7 1566 6 6292
cellular biosynthetic process 1.3053E-3 7 1567 6 6292
biosynthetic process 1.4816E-3 7 1602 6 6292
cellular nitrogen compound metabolic process 2.6186E-3 7 1770 6 6292
nitrogen compound metabolic process 2.8003E-3 7 1791 6 6292
protein urmylation 6.6592E-3 7 6 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


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