YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CKA1
  • protein kinase CK2 complex
    		•
  • G2/M transition of mitotic cell cycle
  • G1/S transition of mitotic cell cycle
  • flocculation via cell wall protein-carbohydrate interaction
  • protein amino acid phosphorylation
  • response to DNA damage stimulus
  • regulation of transcription from RNA polymerase III promoter
  • regulation of transcription from RNA polymerase I promoter
  • cellular ion homeostasis
    		•
  • protein kinase CK2 activity
    		•
    POB3
  • nucleus
  • FACT complex
  • nuclear chromatin
  • alpha DNA polymerase:primase complex
    		•
  • chromatin remodeling
  • DNA-dependent DNA replication
  • chromatin assembly or disassembly
  • transcription initiation from RNA polymerase II promoter
  • RNA elongation from RNA polymerase II promoter
    		•
  • chromatin binding
    		•
    PSH1
  • nucleus
    		•
  • RNA elongation from RNA polymerase II promoter
    		•
  • molecular_function
    		•
    SPT16
  • FACT complex
  • nuclear chromatin
  • alpha DNA polymerase:primase complex
  • transcription elongation factor complex
    		•
  • transcription initiation from RNA polymerase II promoter
  • RNA elongation from RNA polymerase II promoter
    		•
  • transcription elongation regulator activity
  • RNA polymerase II transcription elongation factor activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    FACT complex 3.0316E-7 4 2 2 6292
    alpha DNA polymerase:primase complex 6.3596E-6 4 7 2 6292
    nuclear replisome 4.6226E-5 4 18 2 6292
    replisome 4.6226E-5 4 18 2 6292
    nuclear replication fork 5.7381E-5 4 20 2 6292
    transcription elongation factor complex 7.6359E-5 4 23 2 6292
    replication fork 2.5881E-4 4 42 2 6292
    protein-DNA complex 4.7822E-4 4 57 2 6292
    nuclear chromatin 7.8477E-4 4 73 2 6292
    chromatin 8.7301E-4 4 77 2 6292
    protein kinase CK2 complex 2.5411E-3 4 4 1 6292
    nuclear chromosome part 5.2287E-3 4 190 2 6292
    nuclear chromosome 7.4744E-3 4 228 2 6292
    chromosomal part 8.0617E-3 4 237 2 6292
    nucleoplasm part 8.6014E-3 4 245 2 6292
    nucleoplasm 9.9491E-3 4 264 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    RNA elongation from RNA polymerase II promoter 8.7717E-7 4 39 3 6292
    RNA elongation 1.361E-6 4 45 3 6292
    transcription, DNA-dependent 4.0396E-5 4 503 4 6292
    RNA biosynthetic process 4.2031E-5 4 508 4 6292
    transcription 5.8652E-5 4 552 4 6292
    transcription initiation from RNA polymerase II promoter 3.246E-4 4 47 2 6292
    transcription initiation 4.952E-4 4 58 2 6292
    RNA metabolic process 5.2568E-4 4 954 4 6292
    transcription from RNA polymerase II promoter 5.749E-4 4 335 3 6292
    cellular macromolecule biosynthetic process 1.2614E-3 4 1187 4 6292
    macromolecule biosynthetic process 1.27E-3 4 1189 4 6292
    gene expression 1.7224E-3 4 1283 4 6292
    regulation of transcription from RNA polymerase I promoter 2.5411E-3 4 4 1 6292
    nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
    protein complex biogenesis 3.5019E-3 4 155 2 6292
    protein complex assembly 3.5019E-3 4 155 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
    cellular biosynthetic process 3.8359E-3 4 1567 4 6292
    biosynthetic process 4.1907E-3 4 1602 4 6292
    regulation of transcription from RNA polymerase III promoter 4.4437E-3 4 7 1 6292
    cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
    flocculation via cell wall protein-carbohydrate interaction 6.3436E-3 4 10 1 6292
    nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
    flocculation 6.9763E-3 4 11 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein kinase CK2 activity 1.2712E-3 4 2 1 6292
    RNA polymerase II transcription elongation factor activity 8.2408E-3 4 13 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle