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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 9.1004E-7 8 17 3 6292
ribonucleoprotein complex 7.018E-6 8 514 6 6292
preribosome 7.9274E-6 8 34 3 6292
cytosolic small ribosomal subunit 1.1149E-5 8 38 3 6292
non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
intracellular non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
nucleolus 7.7406E-5 8 211 4 6292
small ribosomal subunit 8.0492E-5 8 73 3 6292
cytosolic ribosome 2.1208E-4 8 101 3 6292
intracellular organelle part 2.9704E-4 8 2282 8 6292
organelle part 2.9704E-4 8 2282 8 6292
cytosolic part 3.71E-4 8 122 3 6292
ribosomal subunit 1.2169E-3 8 183 3 6292
nuclear lumen 1.4695E-3 8 453 4 6292
small nucleolar ribonucleoprotein complex 3.4584E-3 8 72 2 6292
cytosol 4.3023E-3 8 284 3 6292
ribosome 4.565E-3 8 290 3 6292
nuclear outer membrane 4.9014E-3 8 86 2 6292
macromolecular complex 5.1894E-3 8 1635 6 6292
nuclear part 5.7545E-3 8 1103 5 6292
organelle lumen 5.9438E-3 8 660 4 6292
intracellular organelle lumen 5.9438E-3 8 660 4 6292
nuclear membrane 6.2001E-3 8 97 2 6292
membrane-enclosed lumen 7.3614E-3 8 700 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.7189E-7 8 128 5 6292
rRNA metabolic process 2.4182E-7 8 137 5 6292
maturation of SSU-rRNA 4.7479E-7 8 59 4 6292
ribosome biogenesis 6.7573E-7 8 346 6 6292
ribonucleoprotein complex biogenesis 1.0727E-6 8 374 6 6292
ncRNA processing 2.291E-6 8 215 5 6292
ncRNA metabolic process 5.5383E-6 8 257 5 6292
RNA processing 3.7674E-5 8 380 5 6292
cellular component biogenesis 4.0619E-5 8 694 6 6292
gene expression 9.518E-5 8 1283 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.0958E-4 8 13 2 6292
regulation of translation 2.1802E-3 8 57 2 6292
posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
RNA metabolic process 2.9766E-3 8 954 5 6292
regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
regulation of protein metabolic process 3.6499E-3 8 74 2 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292
translation 9.4607E-3 8 376 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA helicase activity 1.1875E-3 8 42 2 6292
structural constituent of ribosome 1.8631E-3 8 212 3 6292
helicase activity 4.5722E-3 8 83 2 6292
structural molecule activity 7.087E-3 8 339 3 6292
ribonucleoprotein binding 8.8705E-3 8 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle