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Protein Overview: SNF12

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run MLP2 #13 Mitotic Prep2-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SNF12 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..204] MSA 1.012974 View MSA. No confident structure predictions are available.
2 View Details [205..263] deduced N/A No confident structure predictions are available.
3 View Details [264..566] MSA 5.016935 View MSA. No confident structure predictions are available.
4 View Details [305..450] PSI-BLAST 22.0 Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
5 View Details [451..566] MSA 1.039978 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3
Term Confidence Notes
  • transcription regulator activity
  • 4.01592136607858 bayes_pls_golite062009
  • basal transcription repressor activity
  • 3.09418413549897 bayes_pls_golite062009
  • binding
  • 2.67987108623459 bayes_pls_golite062009
  • transcription coactivator activity
  • 2.58234407051051 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 2.32480271621458 bayes_pls_golite062009
  • transcription repressor activity
  • 1.98538788872171 bayes_pls_golite062009
  • transcription activator activity
  • 1.83085389017135 bayes_pls_golite062009
  • transcription factor binding
  • 1.73032563380905 bayes_pls_golite062009
  • transcription cofactor activity
  • 1.60414428986898 bayes_pls_golite062009
  • protein binding
  • 1.58138506346812 bayes_pls_golite062009
  • structural molecule activity
  • 1.28917299936669 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 1.06026105710513 bayes_pls_golite062009
  • catalytic activity
  • 0.121624777548864 bayes_pls_golite062009
    4
    Term Confidence Notes
  • transcription regulator activity
  • 4.01592136607858 bayes_pls_golite062009
  • basal transcription repressor activity
  • 3.09418413549897 bayes_pls_golite062009
  • binding
  • 2.67987108623459 bayes_pls_golite062009
  • transcription coactivator activity
  • 2.58234407051051 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 2.32480271621458 bayes_pls_golite062009
  • transcription repressor activity
  • 1.98538788872171 bayes_pls_golite062009
  • transcription activator activity
  • 1.83085389017135 bayes_pls_golite062009
  • transcription factor binding
  • 1.73032563380905 bayes_pls_golite062009
  • transcription cofactor activity
  • 1.60414428986898 bayes_pls_golite062009
  • protein binding
  • 1.58138506346812 bayes_pls_golite062009
  • structural molecule activity
  • 1.28917299936669 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 1.06026105710513 bayes_pls_golite062009
  • catalytic activity
  • 0.121624777548864 bayes_pls_golite062009
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle