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Protein Overview: SPBC16D10.08c

General Information:
Name(s) found: SPBC16D10.08c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • heat shock protein Hsp104 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 905 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: chaperone mediated protein folding requiring cofactor [ISSLink to PubMed article]
    cellular response to stress [ISSLink to PubMed article]
    Molecular Function: heat shock protein binding [ISSLink to PubMed article]
    ATP binding [IEA]
    chaperone binding [ISSLink to PubMed article]
    ATPase activity, coupled [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYPFTDKA AKTLSDAYSI AQSYGHSQLT PIHIAAALLS DSDSNGTTLL RTIVDKAGGD  60
   61 GQKFERSVTS RLVRLPAQDP PPEQVTLSPE SAKLLRNAHE LQKTQKDSYI AQDHFIAVFT 120
  121 KDDTLKSLLA EAGVTPKAFE FAVNNVRGNK RIDSKNAEEG FDALNKFTVD LTELARNGQL 180
  181 DPVIGREDEI RRTIRVLSRR TKNNPVLIGE PGVGKTSIAE GLARRIIDDD VPANLSNCKL 240
  241 LSLDVGSLVA GSKFRGEFEE RIKSVLKEVE ESETPIILFV DEMHLLMGAG SGGEGGMDAA 300
  301 NLLKPMLARG KLHCIGATTL AEYKKYIEKD AAFERRFQII LVKEPSIEDT ISILRGLKEK 360
  361 YEVHHGVTIS DRALVTAAHL ASRYLTSRRL PDSAIDLVDE AAAAVRVTRE SQPEVLDNLE 420
  421 RKLRQLRVEI RALEREKDEA SKERLKAARK EAEQVEEETR PIREKYELEK SRGSELQDAK 480
  481 RRLDELKAKA EDAERRNDFT LAADLKYYGI PDLQKRIEYL EQQKRKADAE AIANAQPGSE 540
  541 PLLIDVVGPD QINEIVARWT GIPVTRLKTT EKERLLNMEK VLSKQVIGQN EAVTAVANAI 600
  601 RLSRAGLSDP NQPIASFLFC GPSGTGKTLL TKALASFMFD DENAMIRIDM SEYMEKHSVS 660
  661 RLIGAPPGYV GHEAGGQLTE QLRRRPYSVI LFDEIEKAAP EVLTVLLQVL DDGRITSGQG 720
  721 QVVDAKNAVI IMTSNLGAEY LTTDNESDDG KIDSTTREMV MNSIRGFFRP EFLNRISSIV 780
  781 IFNRLRRVDI RNIVENRILE VQKRLQSNHR SIKIEVSDEA KDLLGSAGYS PAYGARPLNR 840
  841 VIQNQVLNPM AVLILNGQLR DKETAHVVVQ NGKIFVKPNH EANANGSADI DMDGIDDDVN 900
  901 DEELE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..905] PSI-BLAST 160.0 Crystal Structure Analysis of ClpB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  3.54081962055485 bayes_pls_golite062009
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•  3.36181317078971 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.29578916194335 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.95079405147356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.87427509025394 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.85499564954033 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.85178667290149 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • ATPase activity
    		•  2.39535714892224 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  2.32451967319952 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  2.20669061476179 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.18396165590908 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.11222585187695 bayes_pls_golite062009
  • DNA binding
    		•  1.7904783386531 bayes_pls_golite062009
  • protein transporter activity
    		•  1.71214667007262 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.68903321260301 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.67543589693508 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.29730375126024 bayes_pls_golite062009
  • protein binding
    		•  1.22129154759482 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • motor activity
    		•  0.87979065815418 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.860102064846772 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.762584163889896 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.75383985982414 bayes_pls_golite062009
  • guanyl nucleotide binding
    		•  0.640772201693186 bayes_pls_golite062009
  • transcription activator activity
    		•  0.638755032892208 bayes_pls_golite062009
  • guanyl ribonucleotide binding
    		•  0.63468044350616 bayes_pls_golite062009
  • GTP binding
    		•  0.621689261700018 bayes_pls_golite062009
  • transcription factor activity
    		•  0.603758349693077 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.49000746592281 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.46552249844591 bayes_pls_golite062009
  • GTPase activity
    		•  0.437665353870877 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.434775387083003 bayes_pls_golite062009
  • ATP binding
    		•  0.41092997612902 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.385813421701492 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.377870145186619 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.355466224802969 bayes_pls_golite062009
  • helicase activity
    		•  0.33971254173831 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.334630071828653 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.294474570607914 bayes_pls_golite062009
  • translation regulator activity
    		•  0.29096092258568 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.282352478532746 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.274994961137851 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  0.270268254152179 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.220608508617331 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.219533217661421 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.219157471322311 bayes_pls_golite062009
  • signal recognition particle binding
    		•  0.20866768220789 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.11674780318211 bayes_pls_golite062009
  • structural molecule activity
    		•  0.11239762372728 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0254369227200564 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.0136700590511267 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.0136700590511267 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle