Protein Overview: YCG1

General Information:
Name(s) found:	YCG1 / YDR325W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|31076625\|sp\|Q06680.2\|CND3_YEAST RecName: Full=Condensin complex subunit 3; AltName: Full=CAPG homolog [NCBI NR] gi\|27469361\|ref\|NP_010612.2\| Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin binding of the condensin complex; Ycg1p [NCBI NR] gi\|27316975\|gb\|AAB64761.2\| Ydr325wp [Saccharomyces cerevisiae] [NCBI NR] Condensin complex subunit 3 OS=Saccharomyces cerevisiae GN=YCG1 PE=1 SV=2 [Swiss-Prot] YCG1 Yeast Condensin G [mips] Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus [SGD] Chr IV from 1117116-1120223 [yeastorf4.fasta] (Q06680) Condensin complex subunit 3 (CAPG homolog) [4932.FASTACCERV.txt] YCG1 SGDID:S0002733, Chr IV from 1117117-1120224, Verified ORF [yeastflysequest.fasta] YCG1 SGDID:S0002733, Chr IV from 1117119-1120226, Verified ORF [10112005cervSGD.fasta] Ycg1p [Saccharomyces cerevisiae]gi\|27316975\|gb\|AAB64761.2\| Ydr325wp [Saccharomyces cerevisiae]gi\|31076625\|sp\|Q06680\|CND3_YEAST Condensin complex subunit 3 (CAPG homolog) [nrdb_11152004_Chlamydomonas] YCG1 SGDID:S000002733, Chr IV from 1117119-1120226, Verified ORF, "Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin bi [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YCG1 SGDID:S000002733, Chr IV from 1117121-1120228, Verified ORF, "Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin bi [yeast-contam.fasta] YCG1 SGDID:S000002733, Chr IV from 1117122-1120229, Verified ORF, "Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin bi [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] YCG1 SGDID:S000002733, Chr IV from 1117122-1120229, Verified ORF, "Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for [yeast-200209-contam.fasta] Condensin complex subunit 3 (CAPG homolog) [nr-271106-contam.fasta] Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin binding of the condensin complex; Ycg1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Ydr325wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] YCG1 SGDID:S000002733, Chr IV from 1117122-1120229, Verified ORF, "Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus" [yeast-bovrabprots.fasta] YCG1 SGDID:S000002733, Chr IV from 1117121-1120228, Verified ORF, "Non-SMC subunit of the condensin complex (Smc2p-Smc4p-Ycs4p-Brn1p-Ycg1p); required for establishment and maintenance of chromosome condensation, chromosome segregation and for chromatin binding of the condensin complex" [yeast-contam_custom.fasta] [chemostatdb.fasta] Condensin complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCG1 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YCG1 SGDID:S000002733, Chr IV from 1117126-1120233, Genome Release 64-1-1, Verified ORF, "Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus" [yeast-030211-contam.fasta] YCG1 SGDID:S000002733, Chr IV from 1117126-1120233, Genome Release 64-2-1, Verified ORF, "Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus; required for replication slow zone (RSZ) breakage following Mec1p inactivation" [20141208_orf_trans.fasta] YDR325W SGDID:S000002733, Chr IV from 1117126-1120233, Genome Release 64-1-1, Verified ORF, "Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	1035 amino acids
Gene Ontology:
Cellular Component:	nuclear condensin complex [IGI][ISS]
Biological Process:	meiotic chromosome condensation [IMP] mitotic chromosome condensation [IGI][IMP][TAS] mitotic sister chromatid segregation [IMP]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDPDGIDIN TKIFNSVAEV FQKAQGSYAG HRKHIAVLKK IQSKAVEQGY EDAFNFWFDK  60
   61 LVTKILPLKK NEIIGDRIVK LVAAFIASLE RELILAKKQN YKLTNDEEGI FSRFVDQFIR 120
  121 HVLRGVESPD KNVRFRVLQL LAVIMDNIGE IDESLFNLLI LSLNKRIYDR EPTVRIQAVF 180
  181 CLTKFQDEEQ TEHLTELSDN EENFEATRTL VASIQNDPSA EVRRAAMLNL INDNNTRPYI 240
  241 LERARDVNIV NRRLVYSRIL KSMGRKCFDD IEPHIFDQLI EWGLEDRELS VRNACKRLIA 300
  301 HDWLNALDGD LIELLEKLDV SRSSVCVKAI EALFQSRPDI LSKIKFPESI WKDFTVEIAF 360
  361 LFRAIYLYCL DNNITEMLEE NFPEASKLSE HLNHYILLRY HHNDISNDSQ SHFDYNTLEF 420
  421 IIEQLSIAAE RYDYSDEVGR RSMLTVVRNM LALTTLSEPL IKIGIRVMKS LSINEKDFVT 480
  481 MAIEIINDIR DDDIEKQEQE EKIKSKKINR RNETSVDEED ENGTHNDEVN EDEEDDNISS 540
  541 FHSAVENLVQ GNGNVSESDI INNLPPEKEA SSATIVLCLT RSSYMLELVN TPLTENILIA 600
  601 SLMDTLITPA VRNTAPNIRE LGVKNLGLCC LLDVKLAIDN MYILGMCVSK GNASLKYIAL 660
  661 QVIVDIFSVH GNTVVDGEGK VDSISLHKIF YKVLKNNGLP ECQVIAAEGL CKLFLADVFT 720
  721 DDDLFETLVL SYFSPINSSN EALVQAFAFC IPVYCFSHPA HQQRMSRTAA DILLRLCVLW 780
  781 DDLQSSVIPE VDREAMLKPN IIFQQLLFWT DPRNLVNQTG STKKDTVQLT FLIDVLKIYA 840
  841 QIEKKEIKKM IITNINAIFL SSEQDYSTLK ELLEYSDDIA ENDNLDNVSK NALDKLRNNL 900
  901 NSLIEEINER SETQTKDENN TANDQYSSIL GNSFNKSSND TIEHAADITD GNNTELTKTT 960
  961 VNISAVDNTT EQSNSRKRTR SEAEQIDTSK NLENMSIQDT STVAKNVSFV LPDEKSDAMS1020
 1021 IDEEDKDSES FSEVC

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Krogan NJ, et al. (2006)		BRN1 HIS2 SMC2 SMC4 YCG1 YCS4
View Details	Qiu et al. (2008)		SMC2 SMC4 YCG1 YCS4

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	CEP3	sample cbf3 from feb 2005	Sandall S, et all (2006)
View Run	RPA135	No Comments	Schneider, DA, et al. (2006)
View Run	ZDS1	Sample 2- cpn2 from june 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

	PROTEIN(S)	PUBLICATION
View Data	YCG1	Huh WK, et al. (2003)
View Data	YCG1 and NOP56	Huh WK, et al. (2003)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..69]	PSI-BLAST	22.69897	Adaptin beta subunit N-terminal fragment
2	View Details	[70..716]	PSI-BLAST	23.154902	Constant regulatory domain of protein phosphatase 2a, pr65alpha
3	View Details	[717..793]	deduced	N/A	No confident structure predictions are available.
4	View Details	[794..1035]	deduced	N/A	No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.95

Protein Overview: YCG1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: