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Protein Overview: ISM1

General Information:
Name(s) found: ISM1 / YPL040C [SGD]
Description(s) found:
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  • gi|6325217|ref|NP_015285.1| Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth; Ism1p [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S62035 isoleucine-tRNA ligase (EC 6.1.1.5), mitochondrial - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1711634|sp|P48526.2|SYIM_YEAST RecName: Full=Isoleucyl-tRNA synthetase, mitochondrial; AltName: Full=Isoleucine--tRNA ligase; Short=IleRS [NCBI NR]
  • gi|1171418|gb|AAB68180.1| Ism1p: mitochondrial isoleucyl-tRNA synthetase [Saccharomyces cerevisiae] [NCBI NR]
  • Isoleucyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=ISM1 PE=1 SV=2 [Swiss-Prot]
  • ISM1 Isoleucine--tRNA ligase, mitochondrial [mips]
  • Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth [SGD]
  • (P48526) Isoleucyl-tRNA synthetase, mitochondrial (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) [4932.FASTACCERV.txt]
  • Chr XVI from 478996-475988, reverse complement [hmr_yeast5_DM3-1_pombe.fasta]
  • Chr XVI from 475988-478996, reverse complement [yeastorf3.fasta]
  • ISM1, Chr XVI from 475988-478996, reverse complement [yeast_orfs2]
  • ISM1 SGDID:S0005961, Chr XVI from 478996-475988, reverse complement, Verified ORF [yeastflysequest.fasta]
  • ISM1 SGDID:S0005961, Chr XVI from 478998-475990, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Ism1p [Saccharomyces cerevisiae]gi|1171418|gb|AAB68180.1| Ism1p: mitochondrial isoleucyl-tRNA synthetase [Saccharomyces cerevisiae]gi|2132320|pir||S62035 isoleucine-tRNA ligase (EC 6.1.1.5), mitochondrial - yeast (Saccharomyces cerevisiae)gi|1711634|s [nrdb_11152004_Chlamydomonas]
  • ISM1 SGDID:S000005961, Chr XVI from 478998-475990, reverse complement, Verified ORF, "Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth; Ism1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Ism1p: mitochondrial isoleucyl-tRNA synthetase [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Isoleucyl-tRNA synthetase, mitochondrial (Isoleucine--tRNA ligase) (IleRS) [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Isoleucine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISM1 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • ISM1 SGDID:S000005961, Chr XVI from 479001-475993, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth" [yeast-030211-contam.fasta]
  • ISM1 SGDID:S000005961, Chr XVI from 479001-475993, Genome Release 64-2-1, reverse complement, Verified ORF, "Mitochondrial isoleucyl-tRNA synthetase; null mutant is deficient in respiratory growth" [20141208_orf_trans.fasta]
  • YPL040C SGDID:S000005961, Chr XVI from 479001-475993, Genome Release 64-1-1, reverse complement, Verified ORF, "Mitochondrial isoleucyl-tRNA synthetase, null mutant is deficient in respiratory growth" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1002 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article][IMPLink to PubMed article]
    Biological Process: isoleucyl-tRNA aminoacylation [IMPLink to PubMed article][ISSLink to PubMed article]
    translation [IMPLink to PubMed article][ISSLink to PubMed article]
    Molecular Function: isoleucine-tRNA ligase activity [IMPLink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSRLVPQH IFSIISKRYL AKHAYQKTLN LPKTKFPNRS NLEITLRELI PKSSQLVYKE  60
   61 QLRDFFEEFS KLNTTDEKLE FIKEKLFILH DGPPYANGEL HLGHALNKIL KDIINRYQLS 120
  121 QGKYIFYKPG WDCHGLPIEI KALKDLSAQQ IESISPLKIR SMALKHAQKA IKRQRETFQH 180
  181 FAILTDWETP YLTMDKDYEI NQLNIFKEMY ERGLIKRQNK PVYWGTETRT ALAEGELEYN 240
  241 ENHKSIAAYV KFPLEKKSQM DLCKKLGITN NLPIYCLIWT STPWTLLSNR AICFNQDFSY 300
  301 SLLRLNSELI LVETGSIDKL GLTTNSFETI KQFQGTHLNG LYYQNLLVDD KVGRPLLHGA 360
  361 HVTSGTGTGL VHTAPGHGQD DYLIGIQNGL EIYSPVDHQG RYQLNELPQS VRSIVRDEGD 420
  421 LTKGRQVLDA ETAKIILCKL SDLNLLYKSH EYTHSYPYDW RSKKPVIIRA TPQWFADLHD 480
  481 VKNLALESIS RVKFCPKRGY SRLSSFMKSR NEWCISRQRS WGIPILSFYK KSEPDSVLMN 540
  541 SEILAHAIEK IKQKGINAWF NDKDNDMKEW LPEKYHDVAH EYCRSQDTMD VWFDSGSSWS 600
  601 VIKDFYEKSL KLSKLPSPLY QVCLEGSDQH RGWFQSSLLT KVASSNVPVA PYEEVITHGF 660
  661 TLDENGLKMS KSVGNTISPE AIIRGDENLG LPALGVDGLR YLIAQSNFTT DIVAGPTVMK 720
  721 HVGEALKKVR LTFRYLLSNL QKSQDFNLLP IEQLRRVDQY TLYKINELLE TTREHYQKYN 780
  781 FSKVLITLQY HLNNELSAFY FDISKDILYS NQISSLARRQ VQTTLVHILN AYRAILAPIL 840
  841 PVMVQEVWKY IPEGWLQGQE HIDINPMRGK WPFLDSNTEI VTSFENFELK ILKQFQEEFK 900
  901 RLSLEEGVTK TTHSHVTIFT KHHLPFSSDE LCDILQSSAV DILQMDDNNN SLPTIELGSG 960
  961 INVQILVERS KRHNCPRCWK ANSAEEDKLC DRCKEAVDHL MS

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) ATG33 BUB1 CUL3 GUT1 ISM1 MEC3 MLC1 MYO2 MYO4 RGA1 RSB1 SAT4 SHE2 SHE3 SHE4 SRC1 SSH4 STT4 TOF2 TVP18 YDR186C YOL098C
    View Details Ho Y, et al. (2002) BUB2 ISM1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data ISM1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..34]
    [736..767]
    [793..828]
    [875..885]    		 PSI-BLAST 2460.0 Isoleucyl-tRNA synthetase (IleRS)
    2 View Details [35..87]
    [99..127]
    [174..187]
    [658..735]
    [768..792]
    [829..874]
    [886..1002]    		 PSI-BLAST 2460.0 Isoleucyl-tRNA synthetase (IleRS)
    3 View Details [88..98]
    [128..173]
    [188..219]
    [473..657]    		 PSI-BLAST 2460.0 Isoleucyl-tRNA synthetase (IleRS)
    4 View Details [220..472] PSI-BLAST 2460.0 Isoleucyl-tRNA synthetase (IleRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • valine-tRNA ligase activity
    		•  7.13767629265822 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  6.38633897147986 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • leucine-tRNA ligase activity
    		•  2.62601062778624 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.50161401062914 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • binding
    		•  0.485102284225571 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.449504767632354 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle