Protein Overview: SUV3

General Information:
Name(s) found:	SUV3 / YPL029W [SGD]
Description(s) found: SHOW ONLY BEST	gi\|6325228\|ref\|NP_015296.1\| ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs; Suv3p [Saccharomyces cerevis [NCBI NR] gi\|2506501\|sp\|P32580.2\|SUV3_YEAST RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial; Flags: Precursor [NCBI NR] pir\|\|S63453 probable RNA helicase SUV3, ATP-dependent, precursor - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1039448\|gb\|AAB68158.1\| Suv3p [NCBI NR] ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces cerevisiae GN=SUV3 PE=1 SV=2 [Swiss-Prot] SUV3 ATP-dependent RNA helicase, mitochondrial [mips] ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs [SGD] (P32580) ATP-dependent RNA helicase SUV3, mitochondrial precursor [4932.FASTACCERV.txt] Chr XVI from 495502-497715 [hmr_yeast5_DM3-1_pombe.fasta] SUV3, Chr XVI from 495502-497715 [yeast_orfs2] SUV3 SGDID:S0005950, Chr XVI from 495502-497715, Verified ORF [yeastflysequest.fasta] SUV3 SGDID:S0005950, Chr XVI from 495504-497717, Verified ORF [10112005cervSGD.fasta] ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Msu1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs [Saccharomyces cerevisiae]gi\|2133054\|pir\|\|S63453 probabl [nrdb_11152004_Chlamydomonas] SUV3 SGDID:S000005950, Chr XVI from 495504-497717, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Msu1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unproces [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] SUV3 SGDID:S000005950, Chr XVI from 495504-497717, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unproces [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] Suv3p [nr-271106-contam.fasta] ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Msu1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs; Suv3p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] ATP-dependent RNA helicase SUV3, mitochondrial precursor [nr-271106-contam.fasta] SUV3 SGDID:S000005950, Chr XVI from 495504-497717, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs" [yeast-bovrabprots.fasta] SUV3 SGDID:S000005950, Chr XVI from 495504-497717, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Msu1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs" [yeast-contam_custom.fasta] [chemostatdb.fasta] ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUV3 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] SUV3 SGDID:S000005950, Chr XVI from 495506-497719, Genome Release 64-1-1, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron" [yeast-030211-contam.fasta] SUV3 SGDID:S000005950, Chr XVI from 495506-497719, Genome Release 64-2-1, Verified ORF, "ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron" [20141208_orf_trans.fasta] TR3104\|c0_g1_i1\|g.2222 ORF TR3104\|c0_g1_i1\|g.2222 TR3104\|c0_g1_i1\|m.2222 type:complete len:738 (+) TR3104\|c0_g1_i1:51-2264(+) [Y12_S_cerevisiae-Sep2015-contam.fasta] YPL029W SGDID:S000005950, Chr XVI from 495506-497719, Genome Release 64-1-1, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta] ID=asmbl_3240\|g.2052 ORF ID=asmbl_3240\|g.2052 ID=asmbl_3240\|m.2052 type:complete len:738 (+) ID=asmbl_3240:70-2283(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	737 amino acids
Gene Ontology:
Cellular Component:	mitochondrial matrix [IDA] mitochondrion [IDA ]
Biological Process:	RNA catabolic process [IDA][IMP]
Molecular Function:	ATP-dependent RNA helicase activity [IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVKYSTVF FPLRSLRLFV SIKKAYYHSE PHSIDLFHDK DWIVKRPKFL NLPKNEHSKL  60
   61 DIFQFNFNKS ESNNVYLQDS SFKDNLDKAM QFIYNDKLSS LDAKQVPIKN LAWLKLRDYI 120
  121 YQQLKDPKLQ AKTYVPSVSE IIHPSSPGNL ISLLINCNKI SNLVWKSVLK YSLSNNITTL 180
  181 DKFIHVLQQT FDHVYEQEIL PMMTNTDDTD GAHNVDITNP AEWFPEARKI RRHIIMHIGP 240
  241 TNSGKTYRAL QKLKSVDRGY YAGPLRLLAR EVYDRFHAEK IRCNLLTGEE VIRDLDDRGN 300
  301 SAGLTSGTVE MVPINQKFDV VVLDEIQMMS DGDRGWAWTN ALLGVVSKEV HLCGEKSVLP 360
  361 LVKSIVKMTG DKLTINEYER LGKLSVEEKP IKDGIKGLRK GDCVVAFSKK KILDLKLKIE 420
  421 KDTNLKVAVI YGSLPPETRV QQAALFNNGE YDIMVASDAI GMGLNLSIDR VVFTTNMKYN 480
  481 GEELMEMTSS QIKQIGGRAG RFKSRSASGG VPQGFITSFE SKVLKSVRKA IEAPVEYLKT 540
  541 AVTWPTDEIC AQLMTQFPPG TPTSVLLQTI SDELEKSSDN LFTLSDLKSK LKVIGLFEHM 600
  601 EDIPFFDKLK LSNAPVKDMP MVTKAFTKFC ETIAKRHTRG LLSYRLPFNL LDYNCIPNES 660
  661 YSLEVYESLY NIITLYFWLS NRYPNYFIDM ESAKDLKYFC EMIIFEKLDR LKKNPYAHKP 720
  721 FGSTRGHLSS SRRRLRT

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	(MIPS) Mewes HW, et al. (2004)		AEP1 AEP2 CBP6 CBS1 CBS2 DSS1 MSS51 PET111 PET112 PET122 PET309 PET494 PET54 SUV3
View Details	Ho Y, et al. (2002)		DDC1 HPR1 MEC3 PSK2 RFC4 RPN1 SET1 SFP1 SGS1 SUV3 SWD3
View Details	Qiu et al. (2008)		MSS116 PET54 SUV3

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	MLP2	#26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

	PROTEIN(S)	PUBLICATION
View Data	SUV3	Huh WK, et al. (2003)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..135]	deduced	N/A	No confident structure predictions are available.
2	View Details	[136..542]	PSI-BLAST	84.30103	Initiation factor 4a
3	View Details	[543..655]	PSI-BLAST	7.0	Nucleotide excision repair enzyme UvrB
4	View Details	[656..737]	deduced	N/A	No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: SUV3

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: