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Protein Overview: ECM30

General Information:
Name(s) found: ECM30 / YLR436C [SGD]
Description(s) found:
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  • gi|665974|gb|AAB67519.1| Ecm30p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6323468|ref|NP_013540.1| Non-essential protein of unknown function; Ecm30p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|57012650|sp|Q06673.1|ECM30_YEAST RecName: Full=Protein ECM30; AltName: Full=Extracellular mutant protein 30 [NCBI NR]
  • pir||S59405 probable membrane protein YLR436c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Protein ECM30 OS=Saccharomyces cerevisiae GN=ECM30 PE=1 SV=1 [Swiss-Prot]
  • ECM30 Protein involved in cell wall biogenesis and architecture [mips]
  • Non-essential protein of unknown function [SGD]
  • ECM30, Chr XII from 1007416-1011240, reverse complement [yeast_orfs2]
  • Chr XII from 1007416-1011240, reverse complement [yeastorf3.fasta]
  • Chr XII from 1011240-1007416, reverse complement [yeastorf5.fasta]
  • >Q06673 (Q06673) Chromosome XII COSMID 9753 [4932.FASTACCERV.txt]
  • ECM30 SGDID:S0004428, Chr XII from 1011241-1007417, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Ecm30p [Saccharomyces cerevisiae]gi|665974|gb|AAB67519.1| Ecm30p [Saccharomyces cerevisiae]gi|1363747|pir||S59405 probable membrane protein YLR436c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • (Q06673) Ecm30p [cerv4932.FASTAC]
  • ECM30 SGDID:S000004428, Chr XII from 1011241-1007417, reverse complement, Verified ORF, "Non-essential protein of unknown function" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • ECM30 SGDID:S000004428, Chr XII from 1011242-1007418, reverse complement, Verified ORF, "Non-essential protein of unknown function" [yeast-contam.fasta]
  • Non-essential protein of unknown function; Ecm30p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Extracellular matrix protein 30 [nr-271106-contam.fasta]
  • Ecm30p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Protein ECM30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM30 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • ECM30 SGDID:S000004428, Chr XII from 1011245-1007421, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative protein of unknown function; may play a role in cell wall biosynthesis, mutants have abormal relative levels of mannose and glucose and have Gap1p sorting and transport defects; (GFP)-fusion protein localizes to the cytoplasm" [yeast-030211-contam.fasta]
  • ECM30 SGDID:S000004428, Chr XII from 1011245-1007421, Genome Release 64-2-1, reverse complement, Verified ORF, "Putative protein of unknown function; may play a role in cell wall biosynthesis, mutants have abormal relative levels of mannose and glucose and have Gap1p sorting and transport defects; (GFP)-fusion protein localizes to the cytoplasm" [20141208_orf_trans.fasta]
  • YLR436C SGDID:S000004428, Chr XII from 1011245-1007421, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative protein of unknown function; may play a role in cell wall biosynthesis, mutants have abormal relative levels of mannose and glucose and have Gap1p sorting and transport defects; (GFP)-fusion protein localizes to the cytoplasm" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1274 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: cellular cell wall organization [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTDSKSSS ILLNHCIALV RPEDADASSP SRTSSPSPSL SVDADPLSLN LSIFKLDSGP  60
   61 DVEALFSDKP NVPLDTVFND FYLDFISVDV QDFSINSSFK KILHIISSLN PPNFNNLIVF 120
  121 LSLYIILSAN SLPASRTGLH SSRLINAIKT LSILIPIYFD RVKSSTQDHY DVFWATQHEI 180
  181 EGLPLQNIPL GERLLLAILK LAFQDNFTTA VTAHPSELWE IGILTNSNKY RSLLNMHHQW 240
  241 HLFANRLLLL RLLAALFSSD LYTSGGKQDI NMFLVYWCTQ MPKDKSIQFT SSLLNCTMRF 300
  301 ILNNNKDFQS LKANFFSSDA TASNWQTLYF QFVQSCLHVL NLSMSYKAQD NVITIFLTQL 360
  361 QREYDLKLIL SSFIKIFKYP IDLAIEQESN IFNFTNNKHI DASRRRAVST SSHDNSSSSH 420
  421 ASLPSSSSAA YHTKPQTKPQ LPEIHPLLIP MTILMTNLID CNKCFQNYFA DKFASRFIIF 480
  481 SIYYLKYYDY SSLSSSSSTT RSNSSTTSNG TSNDTSNERS IVELNENSVS QILLPLLNHL 540
  541 LLILTSKKLV LFKMLQTFNL NYYTNNLPNF YKLSNINGDI NNLTFRDFTV IQLSNLILDN 600
  601 IKFNLQPNPI FYELIYNLLP INDEILTSSH KNDDSHDDLI LLSAKKKSAS PSAATSSHTS 660
  661 SSKLSYNAAM SLLYVLSKSS NKVYLTTYAT PVFKTKDIPY MISPGFKMDL LALLLRSITI 720
  721 FFTLYFDDAE NLLFAMVRHQ SITHQINDSI NSISKALDMN PNLNSHIMTL KQMGFNRKVQ 780
  781 WKDFYQFEEI TDLPQVNLYS SANQQHQNQQ QGQNDNRGQN QNEDPGQENE SPTPYLLFNP 840
  841 ASLENETPGT VKHFSSTNHD KNYQVIAFID FKSDSNLNLQ HQLEYWPHRP QWPTPLTFTH 900
  901 KCKNPKYENF NEVWSGTVYL QILLRVIKQI LSKVPEIPRI KSVQYFETLS KLSALRSDIL 960
  961 TTIHPRLPLD VRRLTTFQPL SMHTNDKLLM WFHIATWANI FTQTSFKYEE TFSHELRQFE1020
 1021 SLLDISIDEC EGNTISKPTT DRLGYIRRSR GQSSVSLERT ISAGSGVSTP TMALNRTKSN1080
 1081 GSGNLMNYFF QNTAQNHFQH LRSSSSSSSI TLEKTTSNSS SIRTRPNSHH VAPETNNNNS1140
 1141 TNGNSNNSSN GGFSFFKWKW GGNNSNGGSD DTKASQRDPN VSTSIITDNL NSYMFEEEIS1200
 1201 PGVVNNIIEN NIWVGTDIRL FKIANFRKES FSFLEMTSSF FKKFKFINSD NDNYNNNEFD1260
 1261 DNTQLRYTSR GLYR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) ECM30 UBP15
    View Details Krogan NJ, et al. (2006) ECM30 PAD1 RRT1 UBP15
    View Details Gavin AC, et al. (2006) ECM30 UBP15
    View Details Gavin AC, et al. (2002) ACE2 ALT2 BCK1 CDC11 DRE2 ECM30 ENP2 IML1 MNL1 MTR4 MYO2 RGC1 SEC3 UBP15 YBL044W YJR098C YNL313C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run TAM41 No Comments Hazbun TR, et al. (2003)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen UBC7 ECM30 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data ECM30 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..406] MSA 3.008929 View MSA. No confident structure predictions are available.
    2 View Details [407..1274] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.55

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle