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Protein Overview: PBP1

General Information:
Name(s) found: PBP1 / YGR178C [SGD]
Description(s) found:
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  • gi|6321617|ref|NP_011694.1| Protein interacting with poly(A)-binding protein Pab1p; likely involved in controlling the extent of mRNA polyadenylation; forms a complex with Mkt1p that may regulate HO translation; interacts with Lsm12p in a copurification a [NCBI NR]
  • gi|2737884|gb|AAB94294.1| Mrs16p [NCBI NR]
  • pir||S64492 hypothetical protein YGR178c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1723730|sp|P53297.1|PBP1_YEAST RecName: Full=PAB1-binding protein 1 [NCBI NR]
  • gi|1323315|emb|CAA97204.1| PBP1 [Saccharomyces cerevisiae] [NCBI NR]
  • PAB1-binding protein 1 OS=Saccharomyces cerevisiae GN=PBP1 PE=1 SV=1 [Swiss-Prot]
  • PBP1 Pab1p interacting protein [mips]
  • Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation [SGD]
  • PBP1, Chr VII from 851042-853210, reverse complement [yeast_orfs2]
  • Chr VII from 851042-853210, reverse complement [yeastorf3.fasta]
  • Chr VII from 851049-853217, reverse complement [yeastorf4.fasta]
  • Chr VII from 853217-851049, reverse complement [yeastorf5.fasta]
  • (P53297) PAB1-binding protein 1 [4932.FASTACCERV.txt]
  • PBP1 SGDID:S0003410, Chr VII from 853218-851050, reverse complement, Verified ORF [yeastflysequest.fasta]
  • PBP1 SGDID:S0003410, Chr VII from 853220-851052, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Pbp1p [Saccharomyces cerevisiae]gi|1323315|emb|CAA97204.1| PBP1 [Saccharomyces cerevisiae]gi|2131694|pir||S64492 hypothetical protein YGR178c - yeast (Saccharomyces cerevisiae)gi|2737884|gb|AAB94294.1| Mrs16pgi|1723730|sp|P53297|PBP1_YEAST PAB1-bindin [nrdb_11152004_Chlamydomonas]
  • PBP1 SGDID:S000003410, Chr VII from 853220-851052, reverse complement, Verified ORF, "Protein interacting with poly(A)-binding protein Pab1p; likely involved in control of the extent of mRNA polyadenylation; also interacts with Mkt1p to form a complex tha [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • PBP1 SGDID:S000003410, Chr VII from 853220-851052, reverse complement, Verified ORF, "Protein interacting with poly(A)-binding protein Pab1p; likely involved in controlling the extent of mRNA polyadenylation; forms a complex with Mkt1p that may regulate H [yeast-contam.fasta]
  • PBP1 SGDID:S000003410, Chr VII from 853220-851052, reverse complement, Verified ORF, "Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA [yeast-200209-contam.fasta]
  • PAB1-binding protein 1 [nr-271106-contam.fasta]
  • Mrs16p [nr-271106-contam.fasta]
  • PBP1 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Protein interacting with poly(A)-binding protein Pab1p; likely involved in controlling the extent of mRNA polyadenylation; forms a complex with Mkt1p that may regulate HO translation; interacts with Lsm12p in a copurification assay; Pbp1p [Saccharomyces c [nr-271106-contam.fasta]
  • PBP1 SGDID:S000003410, Chr VII from 853220-851052, reverse complement, Verified ORF, "Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation" [yeast-bovrabprots.fasta]
  • PBP1 SGDID:S000003410, Chr VII from 853220-851052, reverse complement, Verified ORF, "Protein interacting with poly(A)-binding protein Pab1p; likely involved in controlling the extent of mRNA polyadenylation; forms a complex with Mkt1p that may regulate HO translation; interacts with Lsm12p in a copurification assay" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • PAB1-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PBP1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • PBP1 SGDID:S000003410, Chr VII from 853215-851047, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation" [yeast-030211-contam.fasta]
  • PBP1 SGDID:S000003410, Chr VII from 853215-851047, Genome Release 64-2-1, reverse complement, Verified ORF, "Component of glucose deprivation induced stress granules; involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress" [20141208_orf_trans.fasta]
  • YGR178C SGDID:S000003410, Chr VII from 853215-851047, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 722 amino acids

    Gene Ontology:
    Cellular Component: polysome [IDALink to PubMed article]
    nucleus [IDALink to PubMed articleLink to PubMed article]
    cytoplasm [IDALink to PubMed articleLink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    Biological Process: positive regulation of translation [IMPLink to PubMed article][IPILink to PubMed article]
    mRNA polyadenylation [IGILink to PubMed article][IMPLink to PubMed article][IPILink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGNFRKRDS STNSRKGGNS DSNYTNGGVP NQNNSSMFYE NPEITRNFDD RQDYLLANSI  60
   61 GSDVTVTVTS GVKYTGLLVS CNLESTNGID VVLRFPRVAD SGVSDSVDDL AKTLGETLLI 120
  121 HGEDVAELEL KNIDLSLDEK WENSKAQETT PARTNIEKER VNGESNEVTK FRTDVDISGS 180
  181 GREIKERKLE KWTPEEGAEH FDINKGKALE DDSASWDQFA VNEKKFGVKS TFDEHLYTTK 240
  241 INKDDPNYSK RLQEAERIAK EIESQGTSGN IHIAEDRGII IDDSGLDEED LYSGVDRRGD 300
  301 ELLAALKSNS KPNSNKGNRY VPPTLRQQPH HMDPAIISSS NSNKNENAVS TDTSTPAAAG 360
  361 APEGKPPQKT SKNKKSLSSK EAQIEELKKF SEKFKVPYDI PKDMLEVLKR SSSTLKSNSS 420
  421 LPPKPISKTP SAKTVSPTTQ ISAGKSESRR SGSNISQGQS STGHTTRSST SLRRRNHGSF 480
  481 FGAKNPHTND AKRVLFGKSF NMFIKSKEAH DEKKKGDDAS ENMEPFFIEK PYFTAPTWLN 540
  541 TIEESYKTFF PDEDTAIQEA QTRFQQRQLN SMGNAVPGMN PAMGMNMGGM MGFPMGGPSA 600
  601 SPNPMMNGFA AGSMGMYMPF QPQPMFYHPS MPQMMPVMGS NGAEEGGGNI SPHVPAGFMA 660
  661 AGPGAPMGAF GYPGGIPFQG MMGSGPSGMP ANGSAMHSHG HSRNYHQTSH HGHHNSSTSG 720
  721 HK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Gavin AC, et al. (2006) LSM12 PBP1
    View Details Qiu et al. (2008) MKT1 PBP1 SLF1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run BIR1 No Comments Widlund PO, et al. (2005)
    View Run BIR1 No Comments Widlund PO, et al. (2005)
    View Run TOR2 No Comments Reinke A, et al. (2004)
    View Run BIR1 No Comments Widlund PO, et al. (2005)
    View Run BIR1 No Comments Widlund PO, et al. (2005)
    View Run DAD1 Dam1 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run DAD1 Dam1-765 complex purified from yeast with Dad1-TAP Shimogawa MM, et al. (2006)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen LSM12 PBP1 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data PBP1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..195] MSA 2.178995 View MSA. No confident structure predictions are available.
    2 View Details [196..308] ORFEUS 7.87 Fibrinogen
    3 View Details [309..595] ORFEUS 11.12 No description for 1ldvA was found.
    4 View Details [596..722] ORFEUS 7.17 No description for 1la5A was found.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle