| Protein: | PBP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 722 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..722] | [1..722] |
|
|
5.0E-55 | [179..622] | [532..1025] |
|
|
1.0E-54 | [18..590] | [491..1104] |
|
Region A: Residues: [1-195] |
1 11 21 31 41 51
| | | | | |
1 MKGNFRKRDS STNSRKGGNS DSNYTNGGVP NQNNSSMFYE NPEITRNFDD RQDYLLANSI 60
61 GSDVTVTVTS GVKYTGLLVS CNLESTNGID VVLRFPRVAD SGVSDSVDDL AKTLGETLLI 120
121 HGEDVAELEL KNIDLSLDEK WENSKAQETT PARTNIEKER VNGESNEVTK FRTDVDISGS 180
181 GREIKERKLE KWTPE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [196-308] |
1 11 21 31 41 51
| | | | | |
1 EGAEHFDINK GKALEDDSAS WDQFAVNEKK FGVKSTFDEH LYTTKINKDD PNYSKRLQEA 60
61 ERIAKEIESQ GTSGNIHIAE DRGIIIDDSG LDEEDLYSGV DRRGDELLAA LKS
|
| Detection Method: | |
| Confidence: | 7.87 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [309-595] |
1 11 21 31 41 51
| | | | | |
1 NSKPNSNKGN RYVPPTLRQQ PHHMDPAIIS SSNSNKNENA VSTDTSTPAA AGAPEGKPPQ 60
61 KTSKNKKSLS SKEAQIEELK KFSEKFKVPY DIPKDMLEVL KRSSSTLKSN SSLPPKPISK 120
121 TPSAKTVSPT TQISAGKSES RRSGSNISQG QSSTGHTTRS STSLRRRNHG SFFGAKNPHT 180
181 NDAKRVLFGK SFNMFIKSKE AHDEKKKGDD ASENMEPFFI EKPYFTAPTW LNTIEESYKT 240
241 FFPDEDTAIQ EAQTRFQQRQ LNSMGNAVPG MNPAMGMNMG GMMGFPM
|
| Detection Method: | |
| Confidence: | 11.12 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [596-722] |
1 11 21 31 41 51
| | | | | |
1 GGPSASPNPM MNGFAAGSMG MYMPFQPQPM FYHPSMPQMM PVMGSNGAEE GGGNISPHVP 60
61 AGFMAAGPGA PMGAFGYPGG IPFQGMMGSG PSGMPANGSA MHSHGHSRNY HQTSHHGHHN 120
121 SSTSGHK
|
| Detection Method: | |
| Confidence: | 7.17 |
| Match: | 1la5A |
| Description: | No description for 1la5A was found. |
