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Protein Overview: VAC8

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
View Run VAM3 Sample: HX14 - mixture in detergent (control). Hao Xu, et al. (2010)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data VAC8 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..86] PSI-BLAST 123.0 beta-Catenin
2 View Details [87..204] PSI-BLAST 123.0 beta-Catenin
3 View Details [205..293] PSI-BLAST 123.0 beta-Catenin
4 View Details [294..334] PSI-BLAST 123.0 beta-Catenin
5 View Details [335..441] PSI-BLAST 123.0 beta-Catenin
6 View Details [442..578] PSI-BLAST 194.28043 Karyopherin alpha

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • protein transporter activity
  • 3.09219467906677 bayes_pls_golite062009
  • binding
  • 2.48958374349477 bayes_pls_golite062009
  • transporter activity
  • 2.48700774379895 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 2.01243877392722 bayes_pls_golite062009
  • protein binding
  • 1.94427330399472 bayes_pls_golite062009
  • clathrin binding
  • 1.82663703481803 bayes_pls_golite062009
  • transmembrane transporter activity
  • 1.28481004323799 bayes_pls_golite062009
  • protein transmembrane transporter activity
  • 1.27438167414302 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 0.851483195437252 bayes_pls_golite062009
  • nuclear localization sequence binding
  • 0.661470469730249 bayes_pls_golite062009
  • hydrolase activity
  • 0.610187344532862 bayes_pls_golite062009
  • signal sequence binding
  • 0.57106697498903 bayes_pls_golite062009
  • active transmembrane transporter activity
  • 0.252495966234234 bayes_pls_golite062009
  • primary active transmembrane transporter activity
  • 0.00492507437049428 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle