YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|11513338, gi|...

General Information:
Name(s) found: gi|11513340 [NCBI NR]
gi|11513338 [NCBI NR]
gi|11513335 [NCBI NR]
gi|11513333 [NCBI NR]
Description(s) found:
Found 7 descriptions.
SHOW ALL
  • gi|11513340|pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex [NCBI NR]
  • gi|11513338|pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex [NCBI NR]
  • gi|11513335|pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex [NCBI NR]
  • gi|11513333|pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex [NCBI NR]
    • Organism: Homo sapiens
    Length: 141 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIKLQSSD GEIFEVDVEI AKQSVTIKTM LEDLGMDPVP LPNVNAAILK KVIQWCTHHK  60
   61 DDPPPPEDDE NKEKRTDDIP VWDQEFLKVD QGTLFELILA ANYLDIKGLL DVTCKTVANM 120
  121 IKGKTPEEIR KTFNIKNDFT E

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|112491310 gi|11513338, gi|... gi|13786858 gi|150261449 gi|219109210, gi... gi|56554577

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 55.154902 Cyclin A/CDK2-associated p45, Skp1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  6.78934422958647 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  6.52079977531395 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  5.78412146341235 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  4.95822114853319 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  2.77401933213311 bayes_pls_golite062009
  • transporter activity
    		•  2.7339908225983 bayes_pls_golite062009
  • binding
    		•  2.73171412378045 bayes_pls_golite062009
  • cation channel activity
    		•  2.71768147195598 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.69230674138567 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  2.65490556751361 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  2.64938600384117 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  2.64838408752747 bayes_pls_golite062009
  • potassium channel activity
    		•  2.62652737979087 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.61347075279737 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.58329333159441 bayes_pls_golite062009
  • gated channel activity
    		•  2.57592710439337 bayes_pls_golite062009
  • ion channel activity
    		•  2.574752452969 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.54922823284862 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  2.51918375917065 bayes_pls_golite062009
  • channel activity
    		•  2.5028491309185 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  2.5028491309185 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.50017243561816 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.49050794760122 bayes_pls_golite062009
  • protein binding
    		•  2.43603601331034 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  2.38629208611427 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.37599621599404 bayes_pls_golite062009
  • DNA binding
    		•  2.35465234368027 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.8778052324763 bayes_pls_golite062009
  • ligase activity
    		•  1.75579073151181 bayes_pls_golite062009
  • transcription factor activity
    		•  1.69643994786795 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  1.55472700872528 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.784594789263781 bayes_pls_golite062009
  • delayed rectifier potassium channel activity
    		•  0.744657282641449 bayes_pls_golite062009
  • DNA replication origin binding
    		•  0.59693484482914 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.246870129899812 bayes_pls_golite062009
  • catalytic activity
    		•  0.112500532859479 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.033499769837058 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle