| Protein: | gi|25404164, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 686 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404164, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
392.0 | [0..1] | [686..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MGCICSKGVR TNDDYIETNH VSIGKENPKA SKKQSDSEET SVNGNEATLR LIPDDVKDTF 60
61 SDEEVEELEE KKESSFEMKS CESVLQKGNV LEIVDNVGPL QPRMSRIGSV SNGDRAAKVI 120
121 AGWPSWLVSV AGEAINGWIP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [141-475] |
1 11 21 31 41 51
| | | | | |
1 RSADSFEKLE MIGQGTYSSV YRARDLETNQ IVALKKVRFA NMDPESVRFM AREIIILRRL 60
61 NHPNVMKLEG LIISKASGSM YLIFEYMDHD LAGLASTPGI KFSQAQQLLL GLEHCHSCGV 120
121 LHRDIKCSNL LLDRNNNLKI GDFGLSNFYR GQRKQPLTSR VVTLWYRPPE LLLGSTDYGV 180
181 TVDLWSTGCI LAELFTGKPL LPGRTEVEQM HKIFKLCGSP SEEYWRRSRL RHATIFKPQH 240
241 PYKRCVADTF KDLPSSALAL LEVLLAVEPD ARGTASSALQ SEFFTTKPFP SEPSSLPRYQ 300
301 PRKEFDAKLR EEEARRRKGS SSKQNEQKRL ARESK
|
| Detection Method: | |
| Confidence: | 84.69897 |
| Match: | 1vywA |
| Description: | Structure of CDK2/Cyclin A with PNU-292137 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.68265749805481 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 5.49988294224815 | bayes_pls_golite062009 |
| protein kinase activity | 5.4586557943719 | bayes_pls_golite062009 |
| kinase activity | 5.3287080791198 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 4.96052051118534 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase activity | 4.62392503670521 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 4.46381887831481 | bayes_pls_golite062009 |
| transferase activity | 3.97138602499442 | bayes_pls_golite062009 |
| acetylcholine receptor activator activity | 3.57683141337465 | bayes_pls_golite062009 |
| binding | 2.74863538127007 | bayes_pls_golite062009 |
| protein binding | 2.276111749106 | bayes_pls_golite062009 |
| ATP binding | 1.97600611746091 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.94085498993561 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 1.93596671856664 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 1.90928021591891 | bayes_pls_golite062009 |
| signal transducer activity | 1.79921740914853 | bayes_pls_golite062009 |
| molecular transducer activity | 1.79921740914853 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.74206248731815 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 1.70788499622067 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 1.68012041942855 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.65732943334212 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.65726906484847 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.63763394711025 | bayes_pls_golite062009 |
| nucleotide binding | 1.63195828048121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.56748951434625 | bayes_pls_golite062009 |
| phosphoinositide 3-kinase binding | 1.47162554695064 | bayes_pls_golite062009 |
| nucleic acid binding | 1.46547714006072 | bayes_pls_golite062009 |
| MAP kinase kinase activity | 1.42275431028856 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 1.3898059094397 | bayes_pls_golite062009 |
| receptor signaling protein serine/threonine kinase activity | 1.38496328649031 | bayes_pls_golite062009 |
| DNA binding | 1.35333135345112 | bayes_pls_golite062009 |
| receptor signaling protein activity | 1.27291233344322 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.2266791546014 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.22172815474021 | bayes_pls_golite062009 |
| catalytic activity | 1.21655087018101 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.16995153203536 | bayes_pls_golite062009 |
| transcription factor activity | 1.10928254946881 | bayes_pls_golite062009 |
| transcription activator activity | 0.997272622653026 | bayes_pls_golite062009 |
| insulin receptor substrate binding | 0.98689034826741 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.938271345744087 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.913893847407112 | bayes_pls_golite062009 |
| MAP kinase activity | 0.81943579965027 | bayes_pls_golite062009 |
| receptor activity | 0.775180603313375 | bayes_pls_golite062009 |
| hormone receptor binding | 0.705067960165986 | bayes_pls_golite062009 |
| transporter activity | 0.595111702412257 | bayes_pls_golite062009 |
| transcription repressor activity | 0.568332175782799 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase activating kinase activity | 0.529121666062889 | bayes_pls_golite062009 |
| tubulin binding | 0.525721160726465 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 0.505233004492768 | bayes_pls_golite062009 |
| protein serine/threonine/tyrosine kinase activity | 0.48345772948903 | bayes_pls_golite062009 |
| enzyme binding | 0.46284745266176 | bayes_pls_golite062009 |
| actin binding | 0.456340967230669 | bayes_pls_golite062009 |
| kinase binding | 0.443916188551908 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.41384976209545 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase regulator activity | 0.406297251827056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.401250804041384 | bayes_pls_golite062009 |
| structural constituent of muscle | 0.399773397398032 | bayes_pls_golite062009 |
| magnesium ion binding | 0.393328812780268 | bayes_pls_golite062009 |
| MAP kinase kinase kinase activity | 0.37115026509016 | bayes_pls_golite062009 |
| axon guidance receptor activity | 0.330635248803668 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.318153468064373 | bayes_pls_golite062009 |
| protein kinase binding | 0.285611963740145 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 0.240883589532225 | bayes_pls_golite062009 |
| transforming growth factor beta receptor activity | 0.19622756073807 | bayes_pls_golite062009 |
| transmembrane receptor protein serine/threonine kinase activity | 0.19622756073807 | bayes_pls_golite062009 |
| microtubule binding | 0.191960933574742 | bayes_pls_golite062009 |
| growth factor binding | 0.153144089598532 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.0922946791401962 | bayes_pls_golite062009 |
| protein kinase C activity | 0.0795689006739899 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0040394359628233 | bayes_pls_golite062009 |
|
Region A: Residues: [476-686] |
1 11 21 31 41 51
| | | | | |
1 AVPAPSANAE LLASIQKRLG ETNRTSISEK FNPEGDSGNG FRIEPLKGNT AQNPYPIYTN 60
61 GDNHPNGSSQ LRTQRSYVQR GSGQLSRFSN SMAPTRDGSQ FGSMRDAIVN QRWLEDGSEN 120
121 FNLSQRLLEK PNGIRKDDPS SSSKESIMGY DGEKRGRIQY SGPLIPGEGN LDEMLKEHER 180
181 QILLAVRRAQ ADKAKRDDNR QAQTLFPANG R
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
