| Protein: | SNF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1703 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF2.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1703] | [1..1703] |
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0.0 | [1..1703] | [1..1703] |
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0.0 | [66..1529] | [64..1529] |
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0.0 | [76..1500] | [6..1444] |
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0.0 | [64..1182] | [256..1282] |
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0.0 | [76..1500] | [6..1462] |
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0.0 | [443..1476] | [103..1113] |
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Region A: Residues: [1-404] |
1 11 21 31 41 51
| | | | | |
1 MNIPQRQFSN EEVNRCYLRW QHLRNEHGMN APSVPEFIYL TKVLQFAAKQ RQELQMQRQQ 60
61 QGISGSQQNI VPNSSDQAEL PNNASSHISA SASPHLAPNM QLNGNETFST SAHQSPIMQT 120
121 QMPLNSNGGN NMLPQRQSSV GSLNATNFSP TPANNGENAA EKPDNSNHNN LNLNNSELQP 180
181 QNRSLQEHNI QDSNVMPGSQ INSPMPQQAQ MQQAQFQAQQ AQQAQQAQQA QQAQARLQQG 240
241 RRLPMTMFTA EQSELLKAQI TSLKCLVNRK PIPFEFQAVI QKSINHPPDF KRMLLSLSEF 300
301 ARRRQPTDQN NQSNLNGGNN TQQPGTNSHY NNTNTDNVSG LTRNAPLDSK DENFASVSPA 360
361 GPSSVHNAKN GTLDKNSQTV SGTPITQTES KKEENETISN VAKT
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| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [405-708] |
1 11 21 31 41 51
| | | | | |
1 APNSNKTHTE QNNPPKPQKP VPLNVLQDQY KEGIKVVDID DPDMMVDSFT MPNISHSNID 60
61 YQTLLANSDH AKFTIEPGVL PVGIDTHTAT DIYQTLIALN LDTTVNDCLD KLLNDECTES 120
121 TRENALYDYY ALQLLPLQKA VRGHVLQFEW HQNSLLTNTH PNFLSKIRNI NVQDALLTNQ 180
181 LYKNHELLKL ERKKTEAVAR LKSMNKSAIN QYNRRQDKKN KRLKFGHRLI ATHTNLERDE 240
241 QKRAEKKAKE RLQALKANDE EAYIKLLDQT KDTRITHLLR QTNAFLDSLT RAVKDQQKYT 300
301 KEMI
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [709-962] |
1 11 21 31 41 51
| | | | | |
1 DSHIKEASEE VDDLSMVPKM KDEEYDDDDD NSNVDYYNVA HRIKEDIKKQ PSILVGGTLK 60
61 DYQIKGLQWM VSLFNNHLNG ILADEMGLGK TIQTISLLTY LYEMKNIRGP YLVIVPLSTL 120
121 SNWSSEFAKW APTLRTISFK GSPNERKAKQ AKIRAGEFDV VLTTFEYIIK ERALLSKVKW 180
181 VHMIIDEGHR MKNAQSKLSL TLNTHYHADY RLILTGTPLQ NNLPELWALL NFVLPKIFNS 240
241 VKSFDEWFNT PFAN
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| Detection Method: | |
| Confidence: | 7.221849 |
| Match: | 1gm5A_ |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [963-1014] |
1 11 21 31 41 51
| | | | | |
1 TGGQDKIELS EEETLLVIRR LHKVLRPFLL RRLKKDVEKE LPDKVEKVVK CK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.580 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.436 | a.4.1 | Homeodomain-like |
| View | Download | 0.362 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.349 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.325 | a.112.1 | Description not found. |
| View | Download | 0.309 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.291 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.286 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.263 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.262 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.256 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.255 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.250 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.249 | d.58.17 | Metal-binding domain |
| View | Download | 0.248 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.240 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.240 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.225 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.225 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.221 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.216 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.209 | d.58.17 | Metal-binding domain |
| View | Download | 0.202 | a.64.1 | Saposin |
| View | Download | 0.201 | a.126.1 | Serum albumin-like |
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 2.4348680404207 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.07968294254548 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.05990253628867 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| motor activity | 0.677658554107 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| microtubule motor activity | 0.11674780318211 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
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Region A: Residues: [1015-1086] |
1 11 21 31 41 51
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1 MSALQQIMYQ QMLKYRRLFI GDQNNKKMVG LRGFNNQIMQ LKKICNHPFV FEEVEDQINP 60
61 TRETNDDIWR VA
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| Detection Method: | |
| Confidence: | 7.39794 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [1087-1347] |
1 11 21 31 41 51
| | | | | |
1 GKFELLDRIL PKLKATGHRV LIFFQMTQIM DIMEDFLRYI NIKYLRLDGH TKSDERSELL 60
61 RLFNAPDSEY LCFILSTRAG GLGLNLQTAD TVIIFDTDWN PHQDLQAQDR AHRIGQKNEV 120
121 RILRLITTNS VEEVILERAY KKLDIDGKVI QAGKFDNKST SEEQEALLRS LLDAEEERRK 180
181 KRESGVEEEE ELKDSEINEI LARNDEEMAV LTRMDEDRSK KEEELGVKSR LLEKSELPDI 240
241 YSRDIGAELK REESESAAVY N
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| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 1d9xA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [1348-1510] |
1 11 21 31 41 51
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1 GRGARERKTA TYNDNMSEEQ WLRQFEVSDD EKNDKQARKQ RTKKEDKSEA IDGNGEIKGE 60
61 NIDADNDGPR INNISAEDRA DTDLAMNDDD FLSKKRKAGR PRGRPKKVKL EGSENSEPPA 120
121 LESSPVTGDN SPSEDFMDIP KPRTAGKTSV KSARTSTRGR GRG
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1511-1703] |
1 11 21 31 41 51
| | | | | |
1 RGRGRGRGRG RGRPPKARNG LDYVRTPAAA TSPIDIREKV AKQALDLYHF ALNYENEAGR 60
61 KLSDIFLSKP SKALYPDYYM IIKYPVAFDN INTHIETLAY NSLKETLQDF HLIFSNARIY 120
121 NTEGSVVYED SLELEKVVTK KYCEIMGDNS QLDFTEFDEQ YGTRPLVLPP VVTSSVAESF 180
181 TDEADSSMTE ASV
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| Detection Method: | |
| Confidence: | 87.10721 |
| Match: | 1e6iA_ |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
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