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Protein Overview: SNF21_SCHPO

General Information:
Name(s) found: SNF21_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 1199 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAEKQYTRN EVEETIVRWK KLKESGATEH DNTEYAQLCD VLRSAQSEIE ARRDLKGHIK  60
   61 RCFSSVDKNT EKLILKQQVL AYKKLSQNLP APDDCILSVL LRLSKDEQLL QSIVKQPLQN 120
  121 SKVDGKVRRD FGSCQITPSA KQQRKYLQYQ ISEDDAIKNR MFRRMSDLES YPAVMRDVAE 180
  181 LKDDNERLNL DTIKRNALVE LKKLRLIKQQ ESLRHQVMHC QPHLRTIVNA VERMSCRRPK 240
  241 LVPQATRLTE VLERQQRSDR ERRLKQKQCD YLQTVCAHGR EINVRTKNAQ ARAQKANRAV 300
  301 LAYHSHIEKE EQRRAERNAK QRLQALKEND EEAYLKLIDQ AKDTRITHLL RQTDHYLDSL 360
  361 AAAVKVQQSQ FGESAYDEDM DRRMNPEDDR KIDYYNVAHN IREVVTEQPS ILVGGKLKEY 420
  421 QLRGLQWMIS LYNNHLNGIL ADEMGLGKTI QTISLITHLI EKKRQNGPFL VIVPLSTLTN 480
  481 WTMEFERWAP SIVKIVYKGP PQVRKALHPQ VRHSNFQVLL TTYEYIIKDR PLLSRIKWIY 540
  541 MIIDEGHRMK NTQSKLTNTL TTYYSSRYRL ILTGTPLQNN LPELWALLNF VLPRIFNSIK 600
  601 SFDEWFNTPF ANTGGQDKME LTEEESLLVI RRLHKVLRPF LLRRLKKDVE AELPDKVEKV 660
  661 IRCQMSGLQQ KLYYQMKKHG MLYVEDAKRG KTGIKGLQNT VMQLKKICNH PFVFEDVERS 720
  721 IDPTGFNYDM LWRVSGKFEL LDRILPKLFR SGHRILMFFQ MTQIMNIMED YLHYRQWRYL 780
  781 RLDGSTKADD RSKLLGVFND PTAEVNLFLL STRAGGLGLN LQTADTVIIF DSDWNPHQDL 840
  841 QAQDRAHRIG QTKEVRIYRL ITEKSVEENI LARAQYKLDI DGKVIQAGKF DNKSTPEERE 900
  901 AFLRSLLENE NGEEENDEKG ELDDDELNEI LARGDDELRL FKQMTEDLER ESPYGKNKEK 960
  961 ERLIQVSELP EFYQREEPEK TTDLLQEEPL GRGARRRTPV VYDEAVRDAQ WMAEMDMESE1020
 1021 ARPTRGRPKR NIASVDETPA LTLNGKPKKK RGPAPDTLTS EHRSLLRRVC LEIYKAVNEL1080
 1081 EDDNGRPLNK LFLELPSKKL YPDYYMIIKS PIALDAIRKH INGTFYKTLE AMKSDLMTMF1140
 1141 NNARTYNEEG SFVYEDANKM QTAMETKIEE LEEDGTLATL RGMEAEATSQ LEDRIENEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..273] PSI-BLAST 12.30103 Heavy meromyosin subfragment
    2 View Details [274..364] Pfam 11.744727 No description for PF07529.4 was found. Confident ab initio structure predictions are available.
    3 View Details [365..922] PSI-BLAST 88.154902 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    4 View Details [923..1199] PSI-BLAST 20.69897 TAFII250 double bromodomain module

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  3.16853848306485 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.09956015274464 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09345198747025 bayes_pls_golite062009
  • DNA binding
    		•  1.87765278833074 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.23094623498843 bayes_pls_golite062009
  • motor activity
    		•  1.14667913749579 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.07968294254548 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.05990253628867 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.05990253628867 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.75415390146713 bayes_pls_golite062009
  • transcription factor activity
    		•  0.682439846757997 bayes_pls_golite062009
  • helicase activity
    		•  0.6191010101321 bayes_pls_golite062009
  • microtubule motor activity
    		•  0.60036517876321 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.500462538667228 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.41398614759796 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.29664013896754 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.243902356228423 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.18426050934025 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147579541298736 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.14606996093053 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.133017653323467 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.13050483816765 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.111293884322157 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.089234257580272 bayes_pls_golite062009
  • actin binding
    		•  0.00482938540552702 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle