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Protein Overview: gi|13603721

General Information:
Name(s) found: gi|13603721 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|13603721|gb|AAK31908.1|AF247809_1 putative chromatin remodeling protein SYD [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 3574 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    chromatin remodeling complex [ISS]
    Biological Process: flower development [IMP]
    ATP-dependent chromatin remodeling [NAS]
    response to wounding [IEP]
    organ boundary specification between lateral organs and the meristem [IGI]
    regulation of gene expression, epigenetic [IMP]
    Molecular Function: ATPase activity [ISS]
    chromatin binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSHNIEL EAAKFLHKLI QDSKDEPAKL ATKLYVILQH MKTSGKENTM PYQVISRAMD  60
   61 TVVNQHGLDI EALKSSCLPH PGGTQTEDSG SAHLAGSSQA VGVSNEGKAT LVENEMTKYD 120
  121 AFTSGRQLGG SNSASQTFYQ GSGTQSNRSF DRESPSNLDS TSGISQPHNR SETMNQRDVK 180
  181 SSGKRKRGES SLSWDQNMDN SQIFDSHKID DQTGEVSKIE MPGNSGDIRN LHVGLSSDAF 240
  241 TTPQCGWQSS EATAIRPAIH KEPGNNVAGE GFLPSGSPFR EQQLKQLRAQ CLVFLALRNG 300
  301 LVPKKLHVEI ALRNTFREED GFRGELFDPK GRTHTSSDLG GIPDVSALLS RTDNPTGRLD 360
  361 EMDFSSKETE RSRLGEKSFA NTVFSDGQKL LASRIPSSQA QTQVAVSHSQ LTFSPGLTKN 420
  421 TPSEMVGWTG VIKTNDLSTS AVQLDEFHSS DEEEGNLQPS PKYTMSQKWI MGRQNKRLLV 480
  481 DRSWSLKQQK ADQAIGSRFN ELKESVSLSD DISAKTKSVI ELKKLQLLNL QRRLRSEFVY 540
  541 NFFKPIATDV EHLKSYKKHK HGRRIKQLEK YEQKMKEERQ RRIRERQKEF FGGLEVHKEK 600
  601 LEDLFKVRRE RLKGFNRYAK EFHKRKERLH REKIDKIQRE KINLLKINDV EGYLRMVQDA 660
  661 KSDRVKQLLK ETEKYLQKLG SKLKEAKLLT SRFENEADET RTSNATDDET LIENEDESDQ 720
  721 AKHYLESNEK YYLMAHSIKE NINEQPSSLV GGKLREEQMN GLRWLVSLYN NHLNGILADE 780
  781 MGLGKTVQVI SLICYLMETK NDRGPFLVVV PSSVLPGWQS EINFWAPSIH KIVYCGTPDE 840
  841 RRKLFKEQIV HQKFNVLLTT YEYLMNKHDR PKLSKIHWHY IIIDEGHRIK NASCKLNADL 900
  901 KHYVSSHRLL LTGTPLQNNL EELWALLNFL LPNIFNSSED FSQWFNKPFQ SNGESSAEEA 960
  961 LLSEEENLLI INRLHQVLRP FVLRRLKHKV ENELPEKIER LIRCEASAYQ KLLMKRVEDN1020
 1021 LGSIGNAKSR AVHNSVMELR NICNHPYLSQ LHSEEVNNII PKHFLPPIVR LCGKLEMLDR1080
 1081 MLPKLKATDH RVLFFSTMTR LLDVMEDYLT LKGYKYLRLD GQTSGGDRGA LIDGFNKSGS1140
 1141 PFFIFLLSIR AGGVGVNLQA ADTVILFDTD WNPQVDLQAQ ARAHRIGQKK DVLVLRFETV1200
 1201 NSVEEQVRAS AEHKLGVANQ SITAGFFDNN TSAEDRKEYL ESLLRESKKE EDAPVLDDDA1260
 1261 LNDLIARRES EIDIFESIDK QRKENEMETW NTLVHGPGSD SFAHIPSIPS RLVTEDDLKL1320
 1321 LYETMKLNDV PMVAKESTVG MKRKDGSMGG LDTHQYGRGK RAREVRSYEE KLTEEEFEKL1380
 1381 CQTESPDSPQ GKGEGSERSL ANDTSNIPVE NSSDTLLPTS PTQAITVQPM EPVRPQSHTL1440
 1441 KEETQPIKRG RGRPKRTDKA LTPVSLSAVS RTQATGNAIS SAATGLDFVS SDKRLEAASH1500
 1501 PTSSLALTSP DLSGPPGFQS LPASPAPTPI RGRGRGRSRG RGAGRGRRVE GVLHGSNSSI1560
 1561 TQRTETATSL ASDAEATKFA LPRSASEIVS RVPKANEGST SNPDQVSPVH SATTALRSDK1620
 1621 AADKDLDAPP GFDSGSHVQT LNVLENSSER KAFAVKKRPL IQGVSSQHPG PNKQPLDLPV1680
 1681 STSSTLLGGG PVQNQNAVSS VCDGSKSPSE GRTYTALQGV TTAPSDATLP MSSQPSDATL1740
 1741 PMSSQPVGST VEAQEANVPS LPAALPAKRR VRNLPSRGET PKRQGKRRGQ PLPATDASSA1800
 1801 RSTGLTPQIE VKVGNLSGTK AKFDAVAKEQ PHFSQSVAPD IHSSGSLSQE IRRDTSGTGG1860
 1861 SARKQTADVT DVARVMKEIF SETSLLKHKV GEPSATTRTN VPDAQSPGEM NLHTVETHKA1920
 1921 EDSSGLKNQE ALYNLSKADK LVSDIPHPVP GDLTTSGSVA NKDVDIGSSK VAAENELVKI1980
 1981 PGGDVDSSVI QLSLGNTLTA KSSLEKCTAD QLLGEKLSQE GETTPASDGE TCHLAEETAS2040
 2041 SLSYVRSEPT ASASTTAEPL PTDKLEKNIS FQDEVKTLNG DKREAILLSS EEQTNVNSKI2100
 2101 ETNSEELQAS RTDEVPHVDG KSVDVANQTV KEDEAKHSVE IQSSMLEPDE LPNAGQKGHS2160
 2161 SIDLQPLVLV TSNENAMSLD DKDYDPISKS ADIEQDPEES VFVQGVGRPK VGTADTQMED2220
 2221 TNDAKLLVGC SVESEEKEKT LQSLIPGDDA DTEQDPEESV SDQRPKVGSA YTQMEDTDEA2280
 2281 KLLMGCSVES EEKEKTLQSH IPGDDADTEK NPEESVSVQG VDRPKVGTTD TQMEDTNDAK2340
 2341 LLVGCSVASE EKEKTLQSHI PGDDADTEQN PEESVSVQGV NRPKVGNANT QMEDTDEAKV2400
 2401 LVGCSVESEE KEKTLQSHIP GDDADTEQNP EESVSNFDRP KDGTADTHME DIDDAKLLVG2460
 2461 CSVESEEKEK SLQSHMPSDD AVLHAPFENT KDSKGDDLHG ESLVSCPTME VMEQKGFESE2520
 2521 THARTDSGGI DRGNEVSENM SDGVKMNISS VQVPDASHDL NVSQDQTDIP LVGGIDPEHV2580
 2581 QENVDVPASP HGAAPNIVIF QSEGHLSPSI LPDDVAGQLE SMSNDEKTNI SSEQVPDVSH2640
 2641 DLKVSQDQTD IPPVGGIVPE NLQEIVDVPA SPHGVVPDVV VSQSEEIQSP SILPDDVPGQ2700
 2701 PDDGNCEKMD TMQNNTSIDI GITSGKTCQP SSSTQPEDEN RNSLSHCEPS EVVEQRDSRD2760
 2761 QVCIGSVESQ VEISSAILEN RSADIQPPQS ILVDQKDIEE SKEPGIESAD VSLHQLADIQ2820
 2821 AEPSNLVDQM DIEESKEPGT ESADVSLHQL ADIQPGPSIL VDQMDTEKSK EPGTESADVS2880
 2881 LHQLADIQPG PSILVDQMDT EKSKEPGTES ADVSLHQLAD IQPGPSILVD QMDTEEFKNP2940
 2941 DVSLHQLADI EPSLSISAVQ KNIEDKDQSH VETAGSELVD VSAECSTEPQ VQLPPSSEPV3000
 3001 GDMHVHLGAS KSEIVAEGTD FSSSLPKTEE ENAKSQLADT EPSSSLTAVQ KNIEDQVETA3060
 3061 GCEFVVVSTG CSTEPQVQLP PSAEPVVAEG TEFPSSLLMT GVDNSSHLMT GVDNAKTHLA3120
 3121 DVVPSSSPTT MEKNIEAQDQ DQVTTGGCGL VDVLTECSSE PQLQLPPSAE PVISEGTELA3180
 3181 TLPLTEEENA DSQLANIEPS SSPSVVEKNI EAQDQDQVKT AGCELVSTGC SSEPQVHLPP3240
 3241 SAEPDGDIHV HLKETEKSES MVVVGEGTAF PSSLPVTEEG NAESQLADTE PFTSPTVVEK3300
 3301 NIKDQEQVET TGCGLVDDST GCSSEPQVQL PPSAEPMEGT HMHLEETKKS ETVVTEIQLA3360
 3361 DIDPSFSLIV VQTNIEDQDQ IETGGCDLIN VPSGCSTEPQ IQLSSSAEPE EGMHIHLEAA3420
 3421 MNSETVVTEG SELPSSLPMT EDENADGQLA EVEPSVSLTV EQTNIEEKDH IETAECELVD3480
 3481 VSPGCSSQPE VKFPPSPDAV GGMDVHLETV VTEDTDSNSS LPKTEEKDAE NPSDRLDGES3540
 3541 DGTTVATVEG TCVESNSLVA EESNIEVPKD NEDV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle