| Protein: | XPB1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 767 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XPB1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
505.0 | [0..1] | [767..1] |
|
Region A: Residues: [1-161] |
1 11 21 31 41 51
| | | | | |
1 MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD 60
61 HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP ESMHEYNLTP HSLYAAVSVG 120
121 LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL K
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [162-767] |
1 11 21 31 41 51
| | | | | |
1 KNRYFIESPF PEVLKRLLSD DVINRARFSS EPYYGGDGFS VGRTCGELEA GPGELLNEAE 60
61 FAAAAEEKET HSFEIDPAQV ENVKQRCLPN ALNYPMLEEY DFRNDNVNPD LDMELKPHAQ 120
121 PRPYQEKSLS KMFGNGRARS GIIVLPCGAG KSLVGVSAAA RIKKSCLCLA TNAVSVDQWA 180
181 FQFKLWSTIR DDQICRFTSD SKERFRGNAG VVVTTYNMVA FGGKRSEESE KIIEEMRNRE 240
241 WGLLLMDEVH VVPAHMFRKV ISITKSHCKL GLTATLVRED ERITDLNFLI GPKLYEANWL 300
301 DLVKGGFIAN VQCAEVWCPM TKEFFAEYLK KENSKKKQAL YVMNPNKFRA CEFLIRFHEQ 360
361 QRGDKIIVFA DNLFALTEYA MKLRKPMIYG ATSHIERTKI LEAFKTSKDV NTVFLSKVGD 420
421 NSIDIPEANV IIQISSHAGS RRQEAQRLGR ILRAKGKLED RMAGGKEEYN AFFYSLVSTD 480
481 TQEMYYSTKR QQFLIDQGYS FKVITSLPPP DAGSSLSYHS QEEQLSLLGK VMNAGDDLVG 540
541 LEQLEEDTDG MALQKARRSM GSMSVMSGSK GMVYMEYNSG RHKSGQQFKK PKDPTKRHNL 600
601 FKKRYV
|
| Detection Method: | |
| Confidence: | 51.045757 |
| Match: | 2eyqA |
| Description: | Crystal structure of Escherichia coli transcription-repair coupling factor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.47805400577115 | bayes_pls_golite062009 |
| hydrogen ion transporting ATP synthase activity, rotational mechanism | 4.24230705019135 | bayes_pls_golite062009 |
| dATP binding | 3.90236137621968 | bayes_pls_golite062009 |
| hydrogen ion transmembrane transporter activity | 3.27883517727923 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 3.1445172484282 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.99059500119562 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.95079405147356 | bayes_pls_golite062009 |
| adenyl deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| purine deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.87427509025394 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.85499564954033 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.85178667290149 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.72222787956584 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 2.60873257753475 | bayes_pls_golite062009 |
| transporter activity | 2.58140740499725 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.39695871109024 | bayes_pls_golite062009 |
| ATPase activity | 2.39535714892224 | bayes_pls_golite062009 |
| ATPase activity, coupled | 2.18396165590908 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| endonuclease activity | 1.96689197136388 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.85943679361938 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.85937484083653 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.8521191028835 | bayes_pls_golite062009 |
| nucleotide binding | 1.84603132945448 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| ATP binding | 1.5859264197035 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 1.55520429131224 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 1.53158018507951 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.29730375126024 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| kinase activity | 1.21578538537164 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.18669029764243 | bayes_pls_golite062009 |
| protein kinase activity | 1.12864835254143 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.11383295816593 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.906554174337376 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| motor activity | 0.87979065815418 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.579884353047732 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.434775387083003 | bayes_pls_golite062009 |
| microtubule motor activity | 0.35554075339843 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.355466224802969 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.345873656782869 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.294474570607914 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.283577486331079 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.282352478532746 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.220608508617331 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.219533217661421 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.219157471322311 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.181509771587324 | bayes_pls_golite062009 |
| protein transporter activity | 0.178442534411253 | bayes_pls_golite062009 |
| transferase activity | 0.168270793917772 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.132012746266431 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.121792392568515 | bayes_pls_golite062009 |
| GTP binding | 0.119757493758508 | bayes_pls_golite062009 |
| GTPase activity | 0.105546189348878 | bayes_pls_golite062009 |
| proton-transporting ATPase activity, rotational mechanism | 0.0263010404932493 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0254369227200564 | bayes_pls_golite062009 |
