| Protein: | XPB2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 766 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XPB2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
439.0 | [0..1] | [766..1] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MGNDERKRPT KKMKYGGKDD QKMKNIQNVE DYYDDADEDS RDGEGEEKRR DFTDLELKPD 60
61 HGNRPLWACA DGKIFLETFS PLYKQAYDFL IAIAEPVCRP ESMHEYNLTP HSLYAAVSVG 120
121 LETETIISVL NKLSKTKL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [139-766] |
1 11 21 31 41 51
| | | | | |
1 PGEIIDFIHA STANYGKVKL VLKKNRYFIE SPFPEVLKRL LSDDVINRAR FTSEPYYGGD 60
61 GFTIGKTSGE LEAGPGELLN EAELAAAAEE KETHSFEIDP ALVENVKQRC LPNALNYPML 120
121 EEYDFRNDNV NPDLDMELKP HAQPRPYQEK SLSKMFGNGR ARSGIIVLPC GAGKSLVGVS 180
181 AAARIKKSCL CLATNAVSVD QWAYQFKLWS TIKDDQICRF TSDSKERFRG NAGVVVTTYN 240
241 MIAFGGKRSE EAEKIIEEMR NREWGLLLMD EVHVVPAHMF RKVISITKSH CKLGLTATLV 300
301 REDEKITDLN FLIGPKLYEA NWLDLVKGGF IANVQCAEVW CPMTKEFFAE YLKKENSKKK 360
361 QALYVMNPNK FRACEFLIRF HEQQRGDKII VFADNLFALT EYAMKLRKPM IYGATSHIER 420
421 TKILEAFKTS KTVNTVFLSK VGDNSIDIPE ANVIIQISSH AGSRRQEAQR LGRILRAKGK 480
481 LEDRMAGGKE EYNAFFYSLV STDTQEMYYS TKRQQFLIDQ GYSFKVITSL PPPDAGSSLG 540
541 YHSQEEQLSL LGKVLNAGDD MVGLEQLEED TDGKALKTRR SMGSMSAMSG ANGRVYMEYN 600
601 SGRQKSGNQS KKPKDPTKRH NIFKKRYV
|
| Detection Method: | |
| Confidence: | 56.522879 |
| Match: | 2eyqA |
| Description: | Crystal structure of Escherichia coli transcription-repair coupling factor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 5.47805400577115 | bayes_pls_golite062009 |
| hydrogen ion transporting ATP synthase activity, rotational mechanism | 4.24230705019135 | bayes_pls_golite062009 |
| dATP binding | 3.90236137621968 | bayes_pls_golite062009 |
| hydrogen ion transmembrane transporter activity | 3.27883517727923 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 3.1445172484282 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.99059500119562 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.95079405147356 | bayes_pls_golite062009 |
| adenyl deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| purine deoxyribonucleotide binding | 2.90098016780049 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.87427509025394 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.85499564954033 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.85178667290149 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 2.72222787956584 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 2.60873257753475 | bayes_pls_golite062009 |
| transporter activity | 2.58140740499725 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.39695871109024 | bayes_pls_golite062009 |
| ATPase activity | 2.39535714892224 | bayes_pls_golite062009 |
| ATPase activity, coupled | 2.18396165590908 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| endonuclease activity | 1.96689197136388 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.85943679361938 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.85937484083653 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.8521191028835 | bayes_pls_golite062009 |
| nucleotide binding | 1.84603132945448 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| ATP binding | 1.5859264197035 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 1.55520429131224 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 1.53158018507951 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.29730375126024 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| kinase activity | 1.21578538537164 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.18669029764243 | bayes_pls_golite062009 |
| protein kinase activity | 1.12864835254143 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.11383295816593 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.906554174337376 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| motor activity | 0.87979065815418 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.579884353047732 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.434775387083003 | bayes_pls_golite062009 |
| microtubule motor activity | 0.35554075339843 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.355466224802969 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.345873656782869 | bayes_pls_golite062009 |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.294474570607914 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.283577486331079 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.282352478532746 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.220608508617331 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.219533217661421 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.219157471322311 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.181509771587324 | bayes_pls_golite062009 |
| protein transporter activity | 0.178442534411253 | bayes_pls_golite062009 |
| transferase activity | 0.168270793917772 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.132012746266431 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.121792392568515 | bayes_pls_golite062009 |
| GTP binding | 0.119757493758508 | bayes_pls_golite062009 |
| GTPase activity | 0.105546189348878 | bayes_pls_golite062009 |
| proton-transporting ATPase activity, rotational mechanism | 0.0263010404932493 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0254369227200564 | bayes_pls_golite062009 |
