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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 1.06088884218]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

CCR4-NOT core complex 1.4147E-6 2 8 2 6292
CCR4-NOT complex 4.5979E-6 2 14 2 6292
transcription factor complex 1.2556E-4 2 71 2 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
Cdc73/Paf1 complex 2.5415E-3 2 8 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
transcription elongation factor complex 7.2981E-3 2 23 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear-transcribed mRNA poly(A) tail shortening 1.4147E-6 2 8 2 6292
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 1.7735E-5 2 27 2 6292
mRNA 3'-end processing 2.3495E-5 2 31 2 6292
nuclear-transcribed mRNA catabolic process 3.552E-5 2 38 2 6292
RNA elongation from RNA polymerase II promoter 3.744E-5 2 39 2 6292
RNA 3'-end processing 4.3504E-5 2 42 2 6292
RNA elongation 5.0022E-5 2 45 2 6292
mRNA catabolic process 1.1854E-4 2 69 2 6292
RNA catabolic process 1.5966E-4 2 80 2 6292
mRNA processing 6.1087E-4 2 156 2 6292
mRNA metabolic process 1.1408E-3 2 213 2 6292
regulation of transcription from RNA polymerase II promoter 1.3075E-3 2 228 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
traversing start control point of mitotic cell cycle 1.9064E-3 2 6 1 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
regulation of transcription, DNA-dependent 3.2288E-3 2 358 2 6292
regulation of RNA metabolic process 3.3198E-3 2 363 2 6292
RNA processing 3.6384E-3 2 380 2 6292
regulation of transcription 3.7155E-3 2 384 2 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
catabolic process 6.2027E-3 2 496 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
transcription 7.6839E-3 2 552 2 6292
G1 phase of mitotic cell cycle 8.5646E-3 2 27 1 6292
G1 phase 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

3'-5'-exoribonuclease activity 1.2783E-5 2 23 2 6292
exoribonuclease activity 1.6421E-5 2 26 2 6292
exoribonuclease activity, producing 5'-phosphomonoesters 1.6421E-5 2 26 2 6292
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.8346E-5 2 34 2 6292
3'-5' exonuclease activity 3.0063E-5 2 35 2 6292
exonuclease activity 5.2295E-5 2 46 2 6292
ribonuclease activity 5.5711E-4 2 149 2 6292
nuclease activity 9.9543E-4 2 199 2 6292
hydrolase activity, acting on ester bonds 2.929E-3 2 341 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle