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Protein Overview: RAD50

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen SKP1 RAD50 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RAD50 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..56] PSI-BLAST 2.39794 Rad50
2 View Details [57..404] PSI-BLAST 78.228787 Heavy meromyosin subfragment
3 View Details [405..501] deduced N/A No confident structure predictions are available.
4 View Details [502..610] PSI-BLAST 9.69897 Tropomyosin
5 View Details [611..690] PSI-BLAST 9.69897 Tropomyosin
6 View Details [691..752] PSI-BLAST 9.69897 Tropomyosin
7 View Details [753..828] PSI-BLAST 9.69897 Tropomyosin
8 View Details [829..1135] MSA 33.337996 View MSA. No confident structure predictions are available.
9 View Details [1136..1229] PSI-BLAST 38.440336 CRYSTAL STRUCTURE OF ATP-FREE RAD50 ABC-ATPASE
10 View Details [1230..1312] PSI-BLAST 38.440336 CRYSTAL STRUCTURE OF ATP-FREE RAD50 ABC-ATPASE

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3 No functions predicted.
4
Term Confidence Notes
  • transcription regulator activity
  • 3.33295639088462 bayes_pls_golite062009
  • DNA binding
  • 3.24326474452285 bayes_pls_golite062009
  • nucleic acid binding
  • 3.08466758182729 bayes_pls_golite062009
  • binding
  • 2.82931587763241 bayes_pls_golite062009
  • transcription factor activity
  • 2.60119592373341 bayes_pls_golite062009
  • chromatin binding
  • 1.68308196781423 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 1.49672337781081 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 1.27509072978642 bayes_pls_golite062009
  • telomeric DNA binding
  • 1.18912537020579 bayes_pls_golite062009
  • transcription repressor activity
  • 0.92388271789346 bayes_pls_golite062009
  • transcription activator activity
  • 0.76577083878065 bayes_pls_golite062009
  • protein binding
  • 0.730593483550931 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.576650348476301 bayes_pls_golite062009
  • transcription factor binding
  • 0.42980456622574 bayes_pls_golite062009
  • hydrolase activity
  • 0.168066467681021 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 0.10360223465653 bayes_pls_golite062009
  • histone binding
  • 0.0391625783266718 bayes_pls_golite062009
  • double-stranded DNA binding
  • 0.0277518020584662 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle