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Protein Overview: cyp-13A6

General Information:
Name(s) found: cyp-13A6 / CE01657 [WormBase]
Description(s) found:
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  • WBGene00011673 locus:cyp-13A6 Putative cytochrome P450 CYP13A6 status:Partially_confirmed UniProt:Q27515 protein_id:CAA88605.1 [WormBase]
  • pir||T24779 hypothetical protein T10B9.3 - Caenorhabditis elegans [NCBI NR]
  • gi|3879661|emb|CAA88605.1| C. elegans protein T10B9.3, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|2493397|sp|Q27515.1|C13A6_CAEEL RecName: Full=Putative cytochrome P450 CYP13A6 [NCBI NR]
  • gi|17536179|ref|NP_496113.1| CYtochrome P450 family member (cyp-13A6) [Caenorhabditis elegans] [NCBI NR]
  • (Q27515) Putative cytochrome P450 CYP13A6 (EC 1.14.-.-) [Swiss-Prot]
  • Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01657 WBGene00011673 locus:cyp-13A6 cytochrome P450 status:Partially_confirmed SW:Q27515 protein_id:CAA88605.1 [wormpep150.fasta]
  • 01657 WBGene00011673 cytochrome P450 status:Partially_confirmed SW:Q27515 protein_id:CAA88605.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • cytochrome P450 3A3 precursor family member (2K88) [Caenorhabditis elegans]gi|3879661|emb|CAA88605.1| Hypothetical protein T10B9.3 [Caenorhabditis elegans]gi|2493397|sp|Q27515|YRV3_CAEEL Putative cytochrome P450 CYP13A6gi|7507592|pir||T24779 hypothetic [nrdb_11152004_Chlamydomonas]
  • CE01657 WBGene00011673 cytochrome P450 status:Partially_confirmed SW:Q27515 protein_id:CAA88605.1 [wormpep132.fasta]
  • 01657 WBGene00011673 locus:cyp-13A6 cytochrome P450 status:Partially_confirmed SW:Q27515 protein_id:CAA88605.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • cytochrome P450 status:Partially_confirmed SW:Q27515 protein_id:CAA88605.1 [wormpep115.fasta.reversed]
  • CE01657 cytochrome P450 status:Predicted SW:Q27515 protein_id:CAA88605.1 [wormpep80.hongbin]
  • CE01657 WBGene00011673 locus:cyp-13A6 cytochrome P450 status:Partially_confirmed UniProt:Q27515 protein_id:CAA88605.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01657 WBGene00011673 locus:cyp-13A6 cytochrome P450 status:Partially_confirmed UniProt:Q27515 protein_id:CAA88605.1| [wormORF-contam.fasta]
  • Putative cytochrome P450 CYP13A6 [nr-271106-contam.fasta]
  • CYtochrome P450 family member (cyp-13A6) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T10B9.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01657 WBGene00011673 locus:cyp-13A6 status:Partially_confirmed UniProt:Q27515 protein_id:CAA88605.1 Putative cytochrome P450 CYP13A6 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 518 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: electron transport [IEALink to PubMed article]
    Molecular Function: iron ion binding [IEALink to PubMed article]
    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [IEALink to PubMed article]
    monooxygenase activity [IEALink to PubMed article]
    heme binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFVLLSAVL LGVFTYSVWI WSYFIRKGIK GPRGFPGIGM LIQTIDHENP PFLKYRDWTK  60
   61 QYGPVYGFTE GPQQTMIISE PEMVNEIFKK QFDNFYGRKL RPIIGDPEKD KRVNIFSTQG 120
  121 KRWKRLRTLS SPSFSNNSLR KVRNSVQECG TEILWNIEQK VRKNEDIDML IVYQEYTLGV 180
  181 ISRIALGQSE SNMFKNPLLP KVQAIFNGSW HVFLITGIFP PLAGVFRKMS KMLPASFIPA 240
  241 FKIFDLIEVA VQARIDQRAK DEIKGVEPGE PQDFIDLFLD ARVPDVKILS GEANEDFAKS 300
  301 SVVKINKELT FDEIIAQCFV FLAAGFDTTA LSLSYATYLL ATHPEIQTKL QEEVDRECPD 360
  361 PEIFFDHLSK LKYLECVMKE TLRLYPLGTT ANTRKCMRET TINGVNFDEG MNIQVDTWTL 420
  421 HHNPRIWGED VEDFKPERWE NGACEHLEHN GSYIPFGSGP RQCIGMRLAQ MEQKILLAQI 480
  481 LKEYSFRTTK NTQIPVKLVG KLTLSPESVI VKLEPRDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..518] PSI-BLAST 93.522879 Crystal Structure of Human Microsomal P450 3A4

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • arachidonic acid monooxygenase activity
    		•  6.76823710927794 bayes_pls_golite062009
  • fatty acid (omega-1)-hydroxylase activity
    		•  6.3313834755701 bayes_pls_golite062009
  • monooxygenase activity
    		•  5.57229509004705 bayes_pls_golite062009
  • steroid hydroxylase activity
    		•  5.04794778387361 bayes_pls_golite062009
  • arachidonic acid epoxygenase activity
    		•  4.80764258881036 bayes_pls_golite062009
  • electron carrier activity
    		•  4.64931978461551 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen
    		•  4.64322346579269 bayes_pls_golite062009
  • steroid 17-alpha-monooxygenase activity
    		•  3.99744233006162 bayes_pls_golite062009
  • retinoic acid 4-hydroxylase activity
    		•  3.76307535769621 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
    		•  3.68151610133025 bayes_pls_golite062009
  • oxygen binding
    		•  3.29945075872446 bayes_pls_golite062009
  • flavonoid 3'-monooxygenase activity
    		•  3.16634614522939 bayes_pls_golite062009
  • demethylase activity
    		•  2.80780658333504 bayes_pls_golite062009
  • retinoic acid binding
    		•  2.70323898361882 bayes_pls_golite062009
  • retinoid binding
    		•  2.60220937953757 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen
    		•  2.56821164444595 bayes_pls_golite062009
  • isoprenoid binding
    		•  2.47826119804163 bayes_pls_golite062009
  • thromboxane-A synthase activity
    		•  2.45281910634006 bayes_pls_golite062009
  • oxysterol 7-alpha-hydroxylase activity
    		•  2.36480328243514 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.35847923992364 bayes_pls_golite062009
  • sterol 14-demethylase activity
    		•  2.33937429425924 bayes_pls_golite062009
  • steroid 7-alpha-hydroxylase activity
    		•  2.21042366294727 bayes_pls_golite062009
  • oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen
    		•  2.15105968497418 bayes_pls_golite062009
  • steroid 11-beta-monooxygenase activity
    		•  2.13777393591805 bayes_pls_golite062009
  • corticosterone 18-monooxygenase activity
    		•  2.13777393591805 bayes_pls_golite062009
  • arachidonic acid 11,12-epoxygenase activity
    		•  2.0071742914584 bayes_pls_golite062009
  • vitamin D 24-hydroxylase activity
    		•  1.81919676974797 bayes_pls_golite062009
  • vitamin D 25-hydroxylase activity
    		•  1.65825585934141 bayes_pls_golite062009
  • vitamin D3 25-hydroxylase activity
    		•  1.65825585934141 bayes_pls_golite062009
  • testosterone 6-beta-hydroxylase activity
    		•  1.4661447981611 bayes_pls_golite062009
  • binding
    		•  1.2866152532988 bayes_pls_golite062009
  • 25-hydroxycholecalciferol-24-hydroxylase activity
    		•  1.06487564122685 bayes_pls_golite062009
  • ecdysteroid 25-hydroxylase activity
    		•  0.89030345144459 bayes_pls_golite062009
  • protein binding
    		•  0.836411857417911 bayes_pls_golite062009
  • iron ion binding
    		•  0.834040060319729 bayes_pls_golite062009
  • transition metal ion binding
    		•  0.780604486782617 bayes_pls_golite062009
  • cation binding
    		•  0.780350495727298 bayes_pls_golite062009
  • metal ion binding
    		•  0.780350495727298 bayes_pls_golite062009
  • ion binding
    		•  0.773102216481016 bayes_pls_golite062009
  • catalytic activity
    		•  0.608111453189583 bayes_pls_golite062009
  • cholesterol monooxygenase (side-chain-cleaving) activity
    		•  0.276594551871869 bayes_pls_golite062009
  • 1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity
    		•  0.203772707673481 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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