YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SYC1

General Information:
Name(s) found: SYC1 / YOR179C [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|74583732|sp|Q08553.1|SYC1_YEAST RecName: Full=Protein SYC1 [NCBI NR]
  • gi|6324753|ref|NP_014822.1| Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs; Syc1p [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S67071 probable membrane protein YOR179c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1420433|emb|CAA99388.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • Protein SYC1 OS=Saccharomyces cerevisiae GN=SYC1 PE=1 SV=1 [Swiss-Prot]
  • SYC1 Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3` end formation of both polyadenylated and non-polyadenylated RNAs [mips]
  • Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs [SGD]
  • >Q08553 (Q08553) Chromosome XV reading frame ORF YOR179C [4932.FASTACCERV.txt]
  • Chr XV from 672411-671845, reverse complement [hmr_yeast5_DM3-1_pombe.fasta]
  • Chr XV from 671844-672410, reverse complement [yeastorf3.fasta]
  • Chr XV from 671845-672411, reverse complement [yeastorf4.fasta]
  • YOR179C, Chr XV from 671844-672410, reverse complement [yeast_orfs2]
  • SYC1 SGDID:S0005705, Chr XV from 672411-671845, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs [Saccharomyces cerevisiae]gi|1420433|emb|CAA99388.1| unnamed protein product [Saccharomyces cerev [nrdb_11152004_Chlamydomonas]
  • (Q08553) S.cerevisiae chromosome XV reading frame ORF YOR179c [cerv4932.FASTAC]
  • SYC1 SGDID:S000005705, Chr XV from 672411-671845, reverse complement, Verified ORF, "Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • SYC1 SGDID:S000005705, Chr XV from 672412-671846, reverse complement, Verified ORF, "Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs" [yeast-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs; Syc1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Protein SYC1 [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Protein SYC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYC1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • SYC1 SGDID:S000005705, Chr XV from 672411-671845, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs" [yeast-030211-contam.fasta]
  • SYC1 SGDID:S000005705, Chr XV from 672411-671845, Genome Release 64-2-1, reverse complement, Verified ORF, "Subunit of the APT subcomplex of cleavage and polyadenylation factor; may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs; SYC1 has a paralog, YSH1, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
  • YOR179C SGDID:S000005705, Chr XV from 672411-671845, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 188 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mRNA cleavage and polyadenylation specificity factor complex [IPILink to PubMed article]
    Biological Process: termination of RNA polymerase II transcription, poly(A)-coupled [IPILink to PubMed article]
    termination of RNA polymerase II transcription, poly(A)-independent [IPILink to PubMed article]
    Molecular Function: RNA binding [ICLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPKDKSDR THQRINLNNS GTDRTNDLYL HIVQTFGCIE TTATENATKL LMLGDVEVEI  60
   61 SASSVSIEWT QKSMISQTIA DSIVIMIIGL CASDKNVLSE SELKERNHNV WKIQELQNLF 120
  121 REQFGDSFSI DEGIGKKENV KNGSVTIGKS KATIDFSTMK LIDCNSNPLK GRVESILSIG 180
  181 QKLTTPLC

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) GLC7 PTA1 PTI1 REF2 SSU72 SWD2 SYC1
    View Details Krogan NJ, et al. (2006) AIM1 CFT1 CFT2 ECM21 FIP1 GIP4 MPE1 PAP1 PFS2 PTA1 PTI1 REF2 SSU72 SWD2 SYC1 YBL010C YLR358C YSH1 YTH1
    View Details Gavin AC, et al. (2002) ACT1 AIM31 CFT1 CFT2 CKA1 CLP1 ENO2 FIP1 GLC7 HHF1, HHF2 HTA1 MPE1 PAP1 PCF11 PFK1 PFS2 PTA1 PTI1 REF2 RNA14 RNA15 RSA3 SEC13 SEC31 SSA3 SSU72 SYC1 TAF6 TIF4632 TYE7 VID24 VMR1 VPS53 YCL046W YSH1 YTH1
    View Details Qiu et al. (2008) CFT1 PTA1 PTI1 REF2 SSU72 SYC1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data SYC1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle