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Protein Overview: ASM4

General Information:
Name(s) found: ASM4 / YDL088C [SGD]
Description(s) found:
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  • gi|6320115|ref|NP_010195.1| Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p; Asm4p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2498160|sp|Q05166.1|NUP59_YEAST RecName: Full=Nucleoporin ASM4; AltName: Full=Nuclear pore protein NUP59 [NCBI NR]
  • pir||S67624 ASM4 protein - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1431116|emb|CAA98654.1| ASM4 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1199559|emb|CAA64923.1| ASM4 [Saccharomyces cerevisiae] [NCBI NR]
  • Nucleoporin ASM4 OS=Saccharomyces cerevisiae GN=ASM4 PE=1 SV=1 [Swiss-Prot]
  • (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59) [Swiss-Prot]
  • ASM4 Component of the karyopherin docking complex of the nuclear pore complex [mips]
  • Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p [SGD]
  • ASM4, Chr IV from 298416-300002, reverse complement [yeast_orfs2]
  • Chr IV from 298416-300002, reverse complement [yeastorf3.fasta]
  • Chr IV from 300002-298416, reverse complement [yeastorf5.fasta]
  • (Q05166) ASM4 protein [4932.FASTACCERV.txt]
  • ASM4 SGDID:S0002246, Chr IV from 300003-298417, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Asm4p [Saccharomyces cerevisiae]gi|1199559|emb|CAA64923.1| ASM4 [Saccharomyces cerevisiae]gi|1431116|emb|CAA98654.1| ASM4 [Saccharomyces cerevisiae]gi|2131182|pir||S67624 ASM4 protein - yeast (Saccharomyces cerevisiae)gi|2498160|sp|Q05166|NU59_YEAST N [nrdb_11152004_Chlamydomonas]
  • ASM4 SGDID:S000002246, Chr IV from 300003-298417, reverse complement, Verified ORF, "Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • ASM4 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p; Asm4p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Nucleoporin ASM4 (Nuclear pore protein NUP59) [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Nucleoporin ASM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASM4 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • ASM4 SGDID:S000002246, Chr IV from 300003-298417, Genome Release 64-1-1, reverse complement, Verified ORF, "Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p" [yeast-030211-contam.fasta]
  • ASM4 SGDID:S000002246, Chr IV from 300003-298417, Genome Release 64-2-1, reverse complement, Verified ORF, "FG-nucleoporin component of central core of nuclear pore complex (NPC); contributes directly to nucleocytoplasmic transport; induces membrane tubulation, which may contribute to nuclear pore assembly; ASM4 has a paralog, NUP53, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
  • YDL088C SGDID:S000002246, Chr IV from 300003-298417, Genome Release 64-1-1, reverse complement, Verified ORF, "Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 528 amino acids

    Gene Ontology:
    Cellular Component: nuclear pore [IDALink to PubMed article]
    Biological Process: mRNA export from nucleus [IMPLink to PubMed article]
    rRNA export from nucleus [TASLink to PubMed article]
    nuclear pore organization [TASLink to PubMed article]
    snRNP protein import into nucleus [TASLink to PubMed article]
    mRNA-binding (hnRNP) protein import into nucleus [TASLink to PubMed article]
    snRNA export from nucleus [TASLink to PubMed article]
    NLS-bearing substrate import into nucleus [TASLink to PubMed article]
    protein export from nucleus [TASLink to PubMed article]
    protein import into nucleus, docking [IPILink to PubMed article]
    ribosomal protein import into nucleus [TASLink to PubMed article]
    Molecular Function: structural molecule activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIRSGNNN GGFTNLTSQA PQTTQMFQSQ SQLQPQPQPQ PQQQQQHLQF NGSSDASSLR  60
   61 FGNSLSNTVN ANNYSSNIGN NSINNNNIKN GTNNISQHGQ GNNPSWVNNP KKRFTPHTVI 120
  121 RRKTTKQNSS SDINQNDDSS SMNATMRNFS KQNQDSKHNE RNKSAANNDI NSLLSNFNDI 180
  181 PPSVTLQDWQ REDEFGSIPS LTTQFVTDKY TAKKTNRSAY DSKNTPNVFD KDSYVRIANI 240
  241 EQNHLDNNYN TAETNNKVHE TSSKSSSLSA IIVFGYPESI SNELIEHFSH FGHIMEDFQV 300
  301 LRLGRGINPN TFRIFHNHDT GCDENDSTVN KSITLKGRNN ESNNKKYPIF TGESWVKLTY 360
  361 NSPSSALRAL QENGTIFRGS LIGCIPYSKN AVEQLAGCKI DNVDDIGEFN VSMYQNSSTS 420
  421 STSNTPSPPN VIITDGTLLR EDDNTPAGHA GNPTNISSPI VANSPNKRLD VIDGKLPFMQ 480
  481 NAGPNSNIPN LLRNLESKMR QQEAKYRNNE PAGFTHKLSN WLFGWNDL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) ASM4 GLE2 MEX67 NSP1 NUP1 NUP116 NUP120 NUP133 NUP145 NUP157 NUP159 NUP170 NUP188 NUP2 NUP42 NUP49 NUP53 NUP60 NUP82 NUP84 POM152

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ESF1 No Comments Hazbun TR, et al. (2003)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen NSE5 ASM4 2 Hazbun TR, et al. (2003)
    View Screen ELM1 ASM4 1 Unpublished Fields Lab Data
    View Screen NSE5 ASM4 1 Hazbun TR, et al. (2003)
    View Screen SPT21 ASM4 1 Unpublished Fields Lab Data
    View Screen YIF1 ASM4 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data ASM4 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] MSA 1.004997 View MSA. No confident structure predictions are available.
    2 View Details [227..425] MSA 1.004996 View MSA. No confident structure predictions are available.
    3 View Details [426..528] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle