YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|42567964, gi|...

General Information:
Name(s) found: gi|42567964 [NCBI NR]
gi|30725320 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|42567964|ref|NP_197475.2| peptidase M28 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30725320|gb|AAP37682.1| At5g19740 [Arabidopsis thaliana] [NCBI NR]
  • At5g19740 [Arabidopsis thaliana]gi|42567964|ref|NP_197475.2| peptidase M28 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptidase M28 family protein, ileal peptidase I100 - Rattus norvegicus, EMBL:AF009921 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | peptidase M28 family protein | chr5:6673988-6676769 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • dipeptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g19740 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Peptidase M28 family protein | chr5:6673986-6676767 FORWARD LENGTH=681 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g19740 OS=Arabidopsis thaliana GN=At5g19740 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 681 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: dipeptidase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKSLAFV IAALSYSFFS LFSSPPKSHY HELFISTSFS DNASVALNLH TLTRRPHVAG  60
   61 TVANAEAAEY VRSVFTSSAL KSHVVAYQVS LTYPVHRSLV LTPTDSAKPI TFLLEQEKLG 120
  121 DNPYANEVMP TFHGYAKSGN VSGPVVYANY GRVEDFVRLK KDMGVNVSGA VVIARYGQIY 180
  181 RGDIVKNAYE AGAVGVVIYT DKRDYGGDEW FPASKWMPPS GVQVGTVYNG LGDPTTPGWA 240
  241 SVDGCERLSD EAVELSGDVP LIPSLPVSAA DAEVILKTVV GDVSDGDVYP VGPGPGVLNL 300
  301 SYIGETVIAK IENVIGVIEG EEEPDRYVIL GNHRDAWTFG AVDPNSGTAV LMEIAQRLDK 360
  361 LQKRGWKPRR TIILCNWDAE EYGLIGSTEW VEENREMLSS RAVAYLNVDC AVSGPGFHAS 420
  421 ATPQLDELIK VAAQEVRDPD NATQTIYESW IGSSDSVVIR RLGGGGSDYA SFVQHVGVPG 480
  481 VDMSFGRGYP VYHSMYDDFT WMEKFGDPMF QRHVAMASVL GLVALRLADE EIIPFNYTSY 540
  541 ALELKKSAED LENEKLGHNI DVSTLIKSIE DLSTAAKHIS LEKEAIKGAL KVRELNDRLM 600
  601 MAERALTDRD GLSERPWYKH LIYGPSKYDD YGSKSFPGVD DAIDNAKKLN TKASWENVQH 660
  661 QIWRVSRAIR HASLVLKGEL I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..681] PSI-BLAST 149.0 No description for 2ootA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.786910294594 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  4.40766568731738 bayes_pls_golite062009
  • transferrin receptor activity
    		•  4.23222910697724 bayes_pls_golite062009
  • hydrolase activity
    		•  2.98013991489506 bayes_pls_golite062009
  • exopeptidase activity
    		•  2.85109457647548 bayes_pls_golite062009
  • metallopeptidase activity
    		•  2.76103081380105 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  2.66431152897721 bayes_pls_golite062009
  • receptor activity
    		•  2.50668975998057 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.43554678928141 bayes_pls_golite062009
  • signal transducer activity
    		•  2.43554678928141 bayes_pls_golite062009
  • metalloexopeptidase activity
    		•  1.76058821499096 bayes_pls_golite062009
  • catalytic activity
    		•  1.3989281287879 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.17701344924757 bayes_pls_golite062009
  • metallocarboxypeptidase activity
    		•  1.15035221474504 bayes_pls_golite062009
  • binding
    		•  1.13031326446259 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.910234727191613 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  0.891655769761122 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.763081363039738 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.725998533127902 bayes_pls_golite062009
  • serine hydrolase activity
    		•  0.596149133958797 bayes_pls_golite062009
  • serine-type peptidase activity
    		•  0.578572340123331 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.328807457631995 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  0.183113991997707 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.175639750716837 bayes_pls_golite062009
  • transition metal ion binding
    		•  0.140027513499495 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.103908874877312 bayes_pls_golite062009
  • aminopeptidase activity
    		•  0.0966237570696103 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle