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Protein Overview: gi|30683251, gi|...

General Information:
Name(s) found: gi|30683251 [NCBI NR]
gi|222422871 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|30683251|ref|NP_196625.2| elongation factor 1-alpha, putative / EF-1-alpha, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|222422871|dbj|BAH19422.1| AT5G10630 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 667 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: GTP binding [IEA]
    zinc ion binding [IEA]
    translation elongation factor activity [ISS]
    GTPase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEAAAE PKEEIAKTQG LWRCAICTYD  60
   61 NVETMFVCDI CGVLRHPVAG NQSINKNTAP FKFDAPSPDD LVSNGLTSSK TGPKGSGDAS 120
  121 MRQKEKQDSV EQKPLKKGGD SSETSSRGRH DKLDDKGGAG GIKSGKSLPK AKADMSNETS 180
  181 SSSKYMETSE SLTGTMNKMS LIGETENSSD IKIRGPKSQS KHKPEEWMLL DKESDALSQL 240
  241 NLAIVGHVDS GKSTLSGRLL HLLGRISQKQ MHKYEKEAKL QGKGSFAYAW ALDESAEERE 300
  301 RGITMTVAVA YFNSKRHHVV LLDSPGHKDF VPNMIAGATQ ADAAILVIDA SVGAFEAGFD 360
  361 NLKGQTREHA RVLRGFGVEQ VIVAINKMDI VGYSKERFDL IKQHVGSFLQ SCRFKDSSLT 420
  421 WIPLSAMENQ NLVAAPSDNR LSSWYQGPCL LDAVDSVKSP DRDVSKPLLM PICDAVRSTS 480
  481 QGQVSACGKL EAGAVRPGSK VMVMPSGDQG TIRSLERDSQ ACTIARAGDN VALALQGIDA 540
  541 NQVMAGDVLC HPDFPVSVAT HLELMVLVLE GATPILLGSQ LEFHVHHAKE AATVVKLVAM 600
  601 LDPKTGQPTK KSPRCLTAKQ SAMLEVSLQN PVCVETFSES RALGRVFLRS SGRTVAMGKV 660
  661 TRIIQDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] FFAS03 1.15 Solution structure of the zf-RanBP domain of p53-binding protein Mdm4
    2 View Details [148..232] FFAS03 1.25 Cell cycle transcription factor DP-2
    3 View Details [233..667] PSI-BLAST 155.0 Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.20328928115433 bayes_pls_golite062009
  • binding
    		•  2.62755151093853 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.4292604688881 bayes_pls_golite062009
  • protein binding
    		•  1.38597557698861 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.29811494217842 bayes_pls_golite062009
  • DNA binding
    		•  1.02997453261872 bayes_pls_golite062009
  • transporter activity
    		•  1.02638225234439 bayes_pls_golite062009
  • transcription factor activity
    		•  0.74366964215867 bayes_pls_golite062009
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  4.46899851171648 bayes_pls_golite062009
  • structural molecule activity
    		•  4.22811609210387 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.13436454849845 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.70008591685767 bayes_pls_golite062009
  • DNA binding
    		•  3.62989551090051 bayes_pls_golite062009
  • binding
    		•  3.37660003833383 bayes_pls_golite062009
  • transcription factor activity
    		•  3.18366984273735 bayes_pls_golite062009
  • RNA binding
    		•  2.57915942568691 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.13838000453063 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.57391998520453 bayes_pls_golite062009
  • transcription activator activity
    		•  1.45104950571349 bayes_pls_golite062009
  • mRNA binding
    		•  1.03970887182906 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.01831614309793 bayes_pls_golite062009
  • protein binding
    		•  0.726445167461826 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.281229260644949 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.254540961816301 bayes_pls_golite062009
  • signal transducer activity
    		•  0.222627259355176 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.222627259355176 bayes_pls_golite062009
  • hydrolase activity
    		•  0.20695163916851 bayes_pls_golite062009
  • receptor binding
    		•  0.158993027578482 bayes_pls_golite062009
  • transferase activity
    		•  0.10058871838551 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0307736199991748 bayes_pls_golite062009
    3
    Term Confidence Notes
  • translation elongation factor activity
    		•  8.90683166637832 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  4.8378725567094 bayes_pls_golite062009
  • translation regulator activity
    		•  4.79814772079421 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  4.56509805974548 bayes_pls_golite062009
  • structural molecule activity
    		•  3.58406348799895 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.95079405147356 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.87427509025394 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.85499564954033 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.85178667290149 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • transporter activity
    		•  2.58140740499725 bayes_pls_golite062009
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • translation release factor activity
    		•  2.49148102494524 bayes_pls_golite062009
  • translation termination factor activity
    		•  2.46464632547226 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.39695871109024 bayes_pls_golite062009
  • ATPase activity
    		•  2.39535714892224 bayes_pls_golite062009
  • RNA binding
    		•  2.29590582680214 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  2.18396165590908 bayes_pls_golite062009
  • actin filament binding
    		•  2.1683792904715 bayes_pls_golite062009
    		• 2.15810909411803 bayes_pls_golite062009
  • motor activity
    		•  2.11140484670646 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.49633029954726 bayes_pls_golite062009
  • actin binding
    		•  1.42666717383185 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.40488517180956 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.35938517416356 bayes_pls_golite062009
  • microfilament motor activity
    		•  1.33993901826495 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.29730375126024 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.989226939888218 bayes_pls_golite062009
  • ATP binding
    		•  0.98146619596929 bayes_pls_golite062009
  • DNA binding
    		•  0.967303417236485 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.949788783884952 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.931486373329219 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.929901285538132 bayes_pls_golite062009
  • nucleotide binding
    		•  0.922442819194247 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.920987930180051 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.920926158369519 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.906554174337376 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.876296121718575 bayes_pls_golite062009
  • mRNA binding
    		•  0.76699944561918 bayes_pls_golite062009
  • peptidyltransferase activity
    		•  0.705667095586631 bayes_pls_golite062009
  • kinase activity
    		•  0.691112783105676 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  0.63002958837536 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.6022754485555 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.499834566483656 bayes_pls_golite062009
  • GTPase activity
    		•  0.437665353870877 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.434775387083003 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.355466224802969 bayes_pls_golite062009
  • anion transmembrane-transporting ATPase activity
    		•  0.353150780751661 bayes_pls_golite062009
  • guanyl nucleotide binding
    		•  0.296406132096546 bayes_pls_golite062009
  • GTP binding
    		•  0.295705904888768 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.294474570607914 bayes_pls_golite062009
  • guanyl ribonucleotide binding
    		•  0.29028316917561 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.282352478532746 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.222424272323909 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.220608508617331 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.219533217661421 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.219157471322311 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  0.14873140406343 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  0.12168417344278 bayes_pls_golite062009
  • helicase activity
    		•  0.0775311459068899 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.0716139935283535 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0434163635422169 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.0430764033739892 bayes_pls_golite062009
  • protein transporter activity
    		•  0.0397092337273124 bayes_pls_golite062009
  • protein kinase activity
    		•  0.0364322017534667 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0254369227200564 bayes_pls_golite062009
  • peptide transporter activity
    		•  0.0135927378126404 bayes_pls_golite062009
  • signal sequence binding
    		•  6.53725193420218E-4 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle