YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NOG1
Organism: Saccharomyces cerevisiae
Length: 647 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOG1.

Description E-value Query
Range		 Subject
Range
gi|7022875, gi|1... - gi|7022875|dbj|BAA91752.1| unnamed protein product [Homo sapiens], gi|193786048|dbj|BAG50937.1| unna...
 0.0 [3..647] [4..634]
gi|13529611 - gi|13529611|gb|AAH05514.1| Gtpbp4-pending protein [Mus musculus]
 0.0 [3..647] [3..633]
NOG1_RAT - Nucleolar GTP-binding protein 1 OS=Rattus norvegicus GN=Gtpbp4 PE=2 SV=3
 0.0 [3..647] [4..637]
gi|151942704 - gi|151942704|gb|EDN61050.1| nucleolar g-protein [Saccharomyces cerevisiae YJM789]
gi|190407863 - gi|190407863|gb|EDV11128.1| nucleolar GTP-binding protein 1 [Saccharomyces cerevisiae RM11-1a]
NOG1_YEAST - Nucleolar GTP-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOG1 PE=...
NOG1 - Putative GTPase that associates with free 60S ribosomal subunits in the nucleolus and is required fo...
 0.0 [1..647] [1..647]
gi|41054121, gi|... - gi|41054121|ref|NP_956145.1| GTP binding protein 4 [Danio rerio], gi|28374270|gb|AAH45447.1| GTP bin...
 0.0 [2..647] [3..631]
NOG1_SCHPO - Probable nucleolar GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=n...
nog1 - GTP binding protein Nog1
 0.0 [5..647] [6..642]

Back

Predicted Domain #1
Region A:
Residues: [1-161] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSWKDIPT VAPANDLLDI VLNRTQRKTP TVIRPGFKIT RIRAFYMRKV KYTGEGFVEK  60
   61 FEDILKGFPN INDVHPFHRD LMDTLYEKNH YKISLAAISR AKSLVEQVAR DYVRLLKFGQ 120
  121 SLFQCKQLKR AALGRMATIV KKLRDPLAYL EQVRQHIGRL P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.09691
Match: 1mkyA_
Description: Probable GTPase Der, N-terminal and middle domains; Probable GTPase Der, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 2.85628130885095 bayes_pls_golite062009
pyrophosphatase activity 2.78950165917982 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.76996223962376 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.7670079419026 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
microtubule motor activity 2.61518930814923 bayes_pls_golite062009
motor activity 2.60481158518321 bayes_pls_golite062009
transporter activity 2.36978240084485 bayes_pls_golite062009
ATPase activity 2.26864012421561 bayes_pls_golite062009
nucleic acid binding 2.21184938313192 bayes_pls_golite062009
transmembrane transporter activity 2.18065576425044 bayes_pls_golite062009
ATPase activity, coupled 2.07184330056272 bayes_pls_golite062009
DNA binding 1.94055378599526 bayes_pls_golite062009
transcription regulator activity 1.83584389083042 bayes_pls_golite062009
structural constituent of ribosome 1.80055405467543 bayes_pls_golite062009
helicase activity 1.70242731830224 bayes_pls_golite062009
RNA binding 1.60613159109369 bayes_pls_golite062009
ribonucleotide binding 1.53142082854758 bayes_pls_golite062009
purine nucleotide binding 1.52938239070386 bayes_pls_golite062009
purine ribonucleotide binding 1.52887308780164 bayes_pls_golite062009
nucleotide binding 1.52746968836881 bayes_pls_golite062009
ubiquitin-protein ligase activity 1.52494005252804 bayes_pls_golite062009
hydrolase activity 1.44476395406467 bayes_pls_golite062009
1.44426272235796 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
microfilament motor activity 1.28029120876672 bayes_pls_golite062009
small conjugating protein ligase activity 1.25258316272121 bayes_pls_golite062009
ATP binding 1.23942044024113 bayes_pls_golite062009
DNA-dependent ATPase activity 1.2155186842031 bayes_pls_golite062009
adenyl ribonucleotide binding 1.21044170258803 bayes_pls_golite062009
adenyl nucleotide binding 1.19481945569892 bayes_pls_golite062009
purine NTP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
ATP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
substrate-specific transporter activity 1.09373202836575 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
microtubule binding 0.889065347963087 bayes_pls_golite062009
structural molecule activity 0.86163779946438 bayes_pls_golite062009
cytoskeletal protein binding 0.832861637931298 bayes_pls_golite062009
tubulin binding 0.818881964708536 bayes_pls_golite062009
DNA polymerase activity 0.795745617990735 bayes_pls_golite062009
structure-specific DNA binding 0.782430219754236 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.771854032852428 bayes_pls_golite062009
acid-amino acid ligase activity 0.736988322066518 bayes_pls_golite062009
DNA helicase activity 0.72881469450553 bayes_pls_golite062009
transcription factor activity 0.697256579145077 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.696000326143746 bayes_pls_golite062009
transcription repressor activity 0.677612020025357 bayes_pls_golite062009
protein-DNA loading ATPase activity 0.650964453464311 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 0.643562482062891 bayes_pls_golite062009
kinase activity 0.641541011250583 bayes_pls_golite062009
double-stranded DNA binding 0.6071273686445 bayes_pls_golite062009
ATP-dependent DNA helicase activity 0.5886142102548 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.584453361662212 bayes_pls_golite062009
DNA clamp loader activity 0.543512707823441 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.39380930211325 bayes_pls_golite062009
actin-dependent ATPase activity 0.36110509588725 bayes_pls_golite062009
protein kinase activity 0.351308564667977 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
actin binding 0.269954671912367 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
ion transmembrane transporter activity 0.140475613064199 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [162-344] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIDPNTRTLL ICGYPNVGKS SFLRCITKSD VDVQPYAFTT KSLYVGHFDY KYLRFQAIDT  60
   61 PGILDRPTEE MNNIEMQSIY AIAHLRSCVL YFMDLSEQCG FTIEAQVKLF HSIKPLFANK 120
  121 SVMVVINKTD IIRPEDLDEE RAQLLESVKE VPGVEIMTSS CQLEENVMEV RNKACEKLLA 180
  181 SRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.09691
Match: 1mkyA_
Description: Probable GTPase Der, N-terminal and middle domains; Probable GTPase Der, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 2.85628130885095 bayes_pls_golite062009
pyrophosphatase activity 2.78950165917982 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.76996223962376 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.7670079419026 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
microtubule motor activity 2.61518930814923 bayes_pls_golite062009
motor activity 2.60481158518321 bayes_pls_golite062009
transporter activity 2.36978240084485 bayes_pls_golite062009
ATPase activity 2.26864012421561 bayes_pls_golite062009
nucleic acid binding 2.21184938313192 bayes_pls_golite062009
transmembrane transporter activity 2.18065576425044 bayes_pls_golite062009
ATPase activity, coupled 2.07184330056272 bayes_pls_golite062009
DNA binding 1.94055378599526 bayes_pls_golite062009
transcription regulator activity 1.83584389083042 bayes_pls_golite062009
structural constituent of ribosome 1.80055405467543 bayes_pls_golite062009
helicase activity 1.70242731830224 bayes_pls_golite062009
RNA binding 1.60613159109369 bayes_pls_golite062009
ribonucleotide binding 1.53142082854758 bayes_pls_golite062009
purine nucleotide binding 1.52938239070386 bayes_pls_golite062009
purine ribonucleotide binding 1.52887308780164 bayes_pls_golite062009
nucleotide binding 1.52746968836881 bayes_pls_golite062009
ubiquitin-protein ligase activity 1.52494005252804 bayes_pls_golite062009
hydrolase activity 1.44476395406467 bayes_pls_golite062009
1.44426272235796 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
microfilament motor activity 1.28029120876672 bayes_pls_golite062009
small conjugating protein ligase activity 1.25258316272121 bayes_pls_golite062009
ATP binding 1.23942044024113 bayes_pls_golite062009
DNA-dependent ATPase activity 1.2155186842031 bayes_pls_golite062009
adenyl ribonucleotide binding 1.21044170258803 bayes_pls_golite062009
adenyl nucleotide binding 1.19481945569892 bayes_pls_golite062009
purine NTP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
ATP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
substrate-specific transporter activity 1.09373202836575 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
microtubule binding 0.889065347963087 bayes_pls_golite062009
structural molecule activity 0.86163779946438 bayes_pls_golite062009
cytoskeletal protein binding 0.832861637931298 bayes_pls_golite062009
tubulin binding 0.818881964708536 bayes_pls_golite062009
DNA polymerase activity 0.795745617990735 bayes_pls_golite062009
structure-specific DNA binding 0.782430219754236 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.771854032852428 bayes_pls_golite062009
acid-amino acid ligase activity 0.736988322066518 bayes_pls_golite062009
DNA helicase activity 0.72881469450553 bayes_pls_golite062009
transcription factor activity 0.697256579145077 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.696000326143746 bayes_pls_golite062009
transcription repressor activity 0.677612020025357 bayes_pls_golite062009
protein-DNA loading ATPase activity 0.650964453464311 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 0.643562482062891 bayes_pls_golite062009
kinase activity 0.641541011250583 bayes_pls_golite062009
double-stranded DNA binding 0.6071273686445 bayes_pls_golite062009
ATP-dependent DNA helicase activity 0.5886142102548 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.584453361662212 bayes_pls_golite062009
DNA clamp loader activity 0.543512707823441 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.39380930211325 bayes_pls_golite062009
actin-dependent ATPase activity 0.36110509588725 bayes_pls_golite062009
protein kinase activity 0.351308564667977 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
actin binding 0.269954671912367 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
ion transmembrane transporter activity 0.140475613064199 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [345-440] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENKLKSQSRI NNVLNKIHVA QPQARDDVKR TPFIPESVKN LKKYDPEDPN RRKLARDIEA  60
   61 ENGGAGVFNV NLKDKYLLED DEWKNDIMPE ILDGKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.09691
Match: 1mkyA_
Description: Probable GTPase Der, N-terminal and middle domains; Probable GTPase Der, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [441-647] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYDFLDPEIA AKLQALEEEE EKLENEGFYN SDDEEEIYDG FEASEVDDIK EKAAWIRNRQ  60
   61 KTMIAEARNR KSLKNKAIMP RSKLTKSFGK MEEHMSTLGH DMSALQDKQN RAARKNRYVE 120
  121 RGSDVVFGDQ DALTASTENG VKLRQTDRLL DGVADGSMRS KADRMAKMER RERNRHAKQG 180
  181 ESDRHNAVSL SKHLFSGKRG VGKTDFR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle