| Protein: | ISW2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1120 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISW2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [6..1079] | [25..1039] |
|
|
0.0 | [1..1120] | [1..1120] |
|
|
0.0 | [1..1104] | [1..1043] |
|
|
0.0 | [1..1104] | [1..1049] |
|
|
0.0 | [57..1098] | [13..1019] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MTTQQEEQRS DTKNSKSESP SEVLVDTLDS KSNGSSDDDN IGQSEELSDK EIYTVEDRPP 60
61 EYWAQRKKKF VLDVDPKYAK QKDKSDTYKR FKYLLGVTDL FRHFIGIKAK HDKNIQKLLK 120
121 QLDSDANKLS KSHSTVSSSS RHHRKTEKEE DAELMADEEE EIVDTYQEDI
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [171-432] |
1 11 21 31 41 51
| | | | | |
1 FVSESPSFVK SGKLRDYQVQ GLNWLISLHE NKLSGILADE MGLGKTLQTI SFLGYLRYVK 60
61 QIEGPFLIIV PKSTLDNWRR EFLKWTPNVN VLVLHGDKDT RADIVRNIIL EARFDVLITS 120
121 YEMVIREKNA LKRLAWQYIV IDEAHRIKNE QSALSQIIRL FYSKNRLLIT GTPLQNNLHE 180
181 LWALLNFLLP DIFGDSELFD EWFEQNNSEQ DQEIVIQQLH SVLNPFLLRR VKADVEKSLL 240
241 PKIETNVYVG MTDMQIQWYK SL
|
| Detection Method: | |
| Confidence: | 105.29243 |
| Match: | PF00176 |
| Description: | SNF2 family N-terminal domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 3.1726526166851 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 2.12258000781149 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.53262078944357 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.53262078944357 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.47858140861683 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| protein binding | 1.22129154759482 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
| nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 1.11383295816593 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription activator activity | 0.889929694023098 | bayes_pls_golite062009 |
| transcription factor activity | 0.887108427603557 | bayes_pls_golite062009 |
| structural molecule activity | 0.86514677273731 | bayes_pls_golite062009 |
| transcription repressor activity | 0.862685397469217 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 0.647625526012423 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| ATP binding | 0.60527666756293 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.573214556107072 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.554530910579109 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.543891899378373 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.388587892299301 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.372638007722845 | bayes_pls_golite062009 |
| GTP binding | 0.364508542344128 | bayes_pls_golite062009 |
| hormone receptor binding | 0.351501100511918 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.324427816547256 | bayes_pls_golite062009 |
| centromeric DNA binding | 0.322818640526369 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 0.246160342138071 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.243902356228423 | bayes_pls_golite062009 |
| GTPase activity | 0.234351968078991 | bayes_pls_golite062009 |
| RNA helicase activity | 0.18426050934025 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.14606996093053 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.13050483816765 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.117412028365885 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [433-494] |
1 11 21 31 41 51
| | | | | |
1 LEKDIDAVNG AVGKREGKTR LLNIVMQLRK CCNHPYLFEG AEPGPPYTTD EHLIFNSGKM 60
61 II
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [495-722] |
1 11 21 31 41 51
| | | | | |
1 LDKLLKRLKE KGSRVLIFSQ MSRLLDILED YCYFRDFEYC RIDGSTSHEE RIEAIDEYNK 60
61 PNSEKFVFLL TTRAGGLGIN LVTADTVILF DSDWNPQADL QAMDRAHRIG QKKQVHVYRF 120
121 VTENAIEEKV IERAAQKLRL DQLVIQQGTG KKTASLGNSK DDLLDMIQFG AKNMFEKKAS 180
181 KVTVDADIDD ILKKGEQKTQ ELNAKYQSLG LDDLQKFNGI ENQSAYEW
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1d9xA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [723-889] |
1 11 21 31 41 51
| | | | | |
1 NGKSFQKKSN DKVVEWINPS RRERRREQTT YSVDDYYKEI IGGGSKSASK QTPQPKAPRA 60
61 PKVIHGQDFQ FFPKELDALQ EKEQLYFKKK VNYKVTSYDI TGDIRNEGSD AEEEEGEYKN 120
121 AANTEGHKGH EELKRRIEEE QEKINSAPDF TQEDELRKQE LISKAFT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [890-1120] |
1 11 21 31 41 51
| | | | | |
1 NWNKRDFMAF INACAKYGRD DMENIKKSID SKTPEEVEVY AKIFWERLKE INGWEKYLHN 60
61 VELGEKKNEK LKFQETLLRQ KIEQCKHPLH ELIIQYPPNN ARRTYNTLED KFLLLAVNKY 120
121 GLRADKLYEK LKQEIMMSDL FTFDWFIKTR TVHELSKRVH TLLTLIVREY EQPDANKKKR 180
181 SRTSATREDT PLSQNESTRA STVPNLPTTM VTNQKDTNDH VDKRTKIDQE A
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
