| Protein: | SEC63 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 663 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC63.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..663] | [1..663] |
|
|
0.0 | [1..654] | [1..607] |
|
|
0.0 | [6..615] | [3..605] |
|
|
0.0 | [22..615] | [1..592] |
|
|
0.0 | [5..487] | [6..508] |
|
|
2.0E-99 | [5..488] | [6..509] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MPTNYEYDEA SETWPSFILT GLLMVVGPMT LLQIYQIFFG ANAEDGNSGK SKEFNEEVFK 60
61 NLNEEYTSDE IKQFRRKFDK NSNKKSKIWS RRNIIIIVGW ILVAILLQRI NSNDAI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [117-241] |
1 11 21 31 41 51
| | | | | |
1 KDAATKLFDP YEILGISTSA SDRDIKSAYR KLSVKFHPDK LAKGLTPDEK SVMEETYVQI 60
61 TKAYESLTDE LVRQNYLKYG HPDGPQSTSH GIALPRFLVD GSASPLLVVC YVALLGLILP 120
121 YFVSR
|
| Detection Method: | |
| Confidence: | 127.502279 |
| Match: | 1xbl__ |
| Description: | DnaJ chaperone, N-terminal (J) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| signal recognition particle binding | 3.28103883404258 | bayes_pls_golite062009 |
| ribonucleoprotein binding | 2.20695097776982 | bayes_pls_golite062009 |
| protein binding | 2.0077819170005 | bayes_pls_golite062009 |
| binding | 1.75184008862922 | bayes_pls_golite062009 |
| transporter activity | 1.29863098651348 | bayes_pls_golite062009 |
| Hsp70 protein binding | 1.13087926351787 | bayes_pls_golite062009 |
| protein transporter activity | 0.939490372372376 | bayes_pls_golite062009 |
| unfolded protein binding | 0.91241047562027 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.812144232432417 | bayes_pls_golite062009 |
| heat shock protein binding | 0.796066295738949 | bayes_pls_golite062009 |
|
Region A: Residues: [242-663] |
1 11 21 31 41 51
| | | | | |
1 WWARTQSYTK KGIHNVTASN FVSNLVNYKP SEIVTTDLIL HWLSFAHEFK QFFPDLQPTD 60
61 FEKLLQDHIN RRDSGKLNNA KFRIVAKCHS LLHGLLDIAC GFRNLDIALG AINTFKCIVQ 120
121 AVPLTPNCQI LQLPNVDKEH FITKTGDIHT LGKLFTLEDA KIGEVLGIKD QAKLNETLRV 180
181 ASHIPNLKII KADFLVPGEN QVTPSSTPYI SLKVLVRSAK QPLIPTSLIP EENLTEPQDF 240
241 ESQRDPFAMM SKQPLVPYSF APFFPTKRRG SWCCLVSSQK DGKILQTPII IEKLSYKNLN 300
301 DDKDFFDKRI KMDLTKHEKF DINDWEIGTI KIPLGQPAPE TVGDFFFRVI VKSTDYFTTD 360
361 LDITMNMKVR DSPAVEQVEV YSEEDDEYST DDDETESDDE SDASDYTDID TDTEAEDDES 420
421 PE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transporter activity | 2.46466249895824 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 2.40264381204753 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.37642404692102 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.37262306131842 | bayes_pls_golite062009 |
| potassium channel activity | 2.35561670403632 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 2.33426249687556 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 2.33102664959792 | bayes_pls_golite062009 |
| substrate-specific channel activity | 2.32502571419352 | bayes_pls_golite062009 |
| voltage-gated channel activity | 2.32465304131102 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 2.3181005726144 | bayes_pls_golite062009 |
| channel activity | 2.3181005726144 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.31677709260544 | bayes_pls_golite062009 |
| cation channel activity | 2.30081429233977 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.28077016868353 | bayes_pls_golite062009 |
| ion channel activity | 2.2553711462771 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.23522391314947 | bayes_pls_golite062009 |
| ATPase activity, coupled | 2.2162185402774 | bayes_pls_golite062009 |
| gated channel activity | 2.16810998541959 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.15379228421204 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.00003070639929 | bayes_pls_golite062009 |
| ATPase activity | 1.94063929259701 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.93031967085303 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.91231918357992 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.90999409453671 | bayes_pls_golite062009 |
| protein binding | 1.90127097529706 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 1.86598930407084 | bayes_pls_golite062009 |
| ligand-gated channel activity | 1.81486809950722 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 1.81486809950722 | bayes_pls_golite062009 |
| binding | 1.77589663168522 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.56566273004515 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.223800319644873 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.223800319644873 | bayes_pls_golite062009 |
| helicase activity | 0.166899434976303 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.0561411188724552 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.0447036496272264 | bayes_pls_golite062009 |
