YRC Public Data Repository - Protein Structure Prediction

Protein:	CCMA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	300.0	[0..2]	[212..6]
gi\|222450603, gi... - gi\|222526724\|ref\|YP_002571195.1\| ABC transporter related [Chloroflexus sp. Y-400-fl], gi\|222450603\|g... gi\|163670063, gi... - gi\|76261358\|ref\|ZP_00768971.1\| ABC transporter related [Chloroflexus aurantiacus J-10-fl], gi\|761637...	300.0	[0..1]	[216..1]
gi\|77459466, gi\|... - gi\|77459466\|ref\|YP_348973.1\| spermidine/putrescine ABC transporter ATP-binding subunit [Pseudomonas ...	297.0	[0..3]	[216..9]
gi\|78217618, gi\|... - gi\|78355213\|ref\|YP_386662.1\| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20], gi\|...	297.0	[0..7]	[215..1]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	296.0	[0..9]	[216..2]
gi\|84384223, gi\|... - gi\|84494730\|ref\|ZP_00993849.1\| putative ABC transporter ATP-binding protein [Janibacter sp. HTCC2649...	296.0	[0..1]	[216..1]
POTA_HAES1 - Spermidine/putrescine import ATP-binding protein PotA OS=Haemophilus somnus (strain 129Pt) GN=potA P... gi\|46156542, gi\|... - gi\|46156542\|ref\|ZP_00204732.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	296.0	[0..1]	[212..1]
gi\|25297353 - pir\|\|F96913 glutamine ABC transporter (ATP-binding protein) CAC0112 [imported] - Clostridium acetobu... gi\|15022938, gi\|... - gi\|15893408\|ref\|NP_346757.1\| glutamine ABC transporter ATP-binding protein [Clostridium acetobutylic...	295.0	[0..5]	[216..1]
gi\|52784220, gi\|... - gi\|52784220\|ref\|YP_090049.1\| hypothetical protein BLi00398 [Bacillus licheniformis ATCC 14580], gi\|5...	295.0	[0..10]	[209..3]
gi\|241908953, gi... - gi\|241908953\|ref\|ZP_04793511.1\| ABC transporter related protein [Desulfovibrio vulgaris RCH1], gi\|24... gi\|46578522, gi\|... - gi\|46578522\|ref\|YP_009330.1\| glutamine ABC transporter, ATP-binding protein [Desulfovibrio vulgaris ...	295.0	[0..7]	[215..1]

Back

Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIISVDTL LSASKLTCIR EERILFDELS FEINAGDIVQ IEGPNGAGKT SLLRILAGLS  60
   61 RPYAGQTFYV NEDINRCRDE YNEDLLYLGH LAGVKSELTA EENLNFNLRI SGYDDFDTSA 120
  121 ILAKVNLSGF EEALAGHLSA GQHRRTALAR LWHNDCKIWI LDEPFTAIDK RGVEELEQLF 180
  181 IKHADNGGCV ILTTHQDMGI IKDDRLRKIR LDYRFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.69897
Match:	1v43A
Description:	Crystal Structure of ATPase subunit of ABC Sugar Transporter
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
P-P-bond-hydrolysis-driven transmembrane transporter activity	6.58863529263644	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	6.58067278719409	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	6.57974651657836	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	6.57922174989907	bayes_pls_golite062009
primary active transmembrane transporter activity	6.57807080367604	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.48406410175216	bayes_pls_golite062009
active transmembrane transporter activity	6.48154954364331	bayes_pls_golite062009
pyrophosphatase activity	6.40467109535527	bayes_pls_golite062009
ATPase activity, coupled	6.40151534181487	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.38373914253885	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.38247436082206	bayes_pls_golite062009
ATPase activity	6.30019941712404	bayes_pls_golite062009
heme transporter activity	4.82479229680991	bayes_pls_golite062009
hydrolase activity	4.60957912556603	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.4837867129694	bayes_pls_golite062009
purine ribonucleotide binding	3.40690615950081	bayes_pls_golite062009
ribonucleotide binding	3.40594996232845	bayes_pls_golite062009
purine nucleotide binding	3.3669118613715	bayes_pls_golite062009
ion transmembrane transporter activity	3.35436118751376	bayes_pls_golite062009
nucleotide binding	3.33248266870364	bayes_pls_golite062009
ATP binding	3.17398570826788	bayes_pls_golite062009
adenyl ribonucleotide binding	3.12628113185041	bayes_pls_golite062009
transporter activity	3.10463051760206	bayes_pls_golite062009
cation transmembrane transporter activity	3.08390071341252	bayes_pls_golite062009
adenyl nucleotide binding	3.0710107594224	bayes_pls_golite062009
transmembrane transporter activity	2.95886887664984	bayes_pls_golite062009
amine-transporting ATPase activity	2.69529191205818	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.67957846350199	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	2.67815672695824	bayes_pls_golite062009
cofactor transporter activity	2.41442360192472	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.40292717311506	bayes_pls_golite062009
amine transmembrane transporter activity	2.29486577878686	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.26365379756656	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.14305203987289	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	2.12727614888121	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	2.1115517127743	bayes_pls_golite062009
substrate-specific transporter activity	1.91091452720653	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.88153949603611	bayes_pls_golite062009
binding	1.8576045268999	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.82177108193332	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.59627719545436	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	1.58971273330352	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	1.4343912580786	bayes_pls_golite062009
peptide-transporting ATPase activity	1.37783759788533	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.23799860254751	bayes_pls_golite062009
peptide transporter activity	1.19353064661766	bayes_pls_golite062009
GTPase activity	1.05341575831759	bayes_pls_golite062009
cation channel activity	0.997064416395892	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.767424210804186	bayes_pls_golite062009
voltage-gated cation channel activity	0.688632087597536	bayes_pls_golite062009
voltage-gated channel activity	0.562664200036023	bayes_pls_golite062009
voltage-gated ion channel activity	0.559798751382976	bayes_pls_golite062009
protein transporter activity	0.498432226280822	bayes_pls_golite062009
catalytic activity	0.458437698837681	bayes_pls_golite062009
branched-chain aliphatic amino acid transmembrane transporter activity	0.442220326523999	bayes_pls_golite062009
anion transmembrane transporter activity	0.43332053110728	bayes_pls_golite062009
protein binding	0.378225828131122	bayes_pls_golite062009
guanyl nucleotide binding	0.373350189511011	bayes_pls_golite062009
guanyl ribonucleotide binding	0.363151049799385	bayes_pls_golite062009
GTP binding	0.343113158179248	bayes_pls_golite062009
potassium channel activity	0.329290830676079	bayes_pls_golite062009
gated channel activity	0.299411774392227	bayes_pls_golite062009
ion channel activity	0.154779598791225	bayes_pls_golite062009
amino acid-transporting ATPase activity	0.147644650870465	bayes_pls_golite062009
motor activity	0.14734538548583	bayes_pls_golite062009
passive transmembrane transporter activity	0.134817721656507	bayes_pls_golite062009
channel activity	0.134817721656507	bayes_pls_golite062009
substrate-specific channel activity	0.126911677161968	bayes_pls_golite062009
cation-transporting ATPase activity	0.0536898657672154	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: