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View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Ybr280c. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

fungal-type vacuole lumen 5.552E-3 5 7 1 6292
fungal-type vacuole 5.9617E-3 5 158 2 6292
lytic vacuole 5.9617E-3 5 158 2 6292
storage vacuole 5.9617E-3 5 158 2 6292
vacuolar lumen 7.1338E-3 5 9 1 6292
SCF ubiquitin ligase complex 8.7135E-3 5 11 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cellular catabolic process 8.8471E-5 5 415 4 6292
catabolic process 1.7899E-4 5 496 4 6292
cellular protein catabolic process 1.895E-4 5 171 3 6292
protein catabolic process 2.5517E-4 5 189 3 6292
cellular macromolecule catabolic process 6.9359E-4 5 265 3 6292
adenine catabolic process 7.9466E-4 5 1 1 6292
macromolecule catabolic process 9.4145E-4 5 294 3 6292
proteasomal protein catabolic process 1.1603E-3 5 69 2 6292
proteasomal ubiquitin-dependent protein catabolic process 1.1603E-3 5 69 2 6292
nucleobase catabolic process 1.5888E-3 5 2 1 6292
purine base catabolic process 1.5888E-3 5 2 1 6292
adenine metabolic process 2.3825E-3 5 3 1 6292
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 5.552E-3 5 7 1 6292
modification-dependent protein catabolic process 5.815E-3 5 156 2 6292
ubiquitin-dependent protein catabolic process 5.815E-3 5 156 2 6292
proteolysis involved in cellular protein catabolic process 6.0357E-3 5 159 2 6292
modification-dependent macromolecule catabolic process 6.4122E-3 5 164 2 6292
proteolysis 8.3678E-3 5 188 2 6292
protein ubiquitination during ubiquitin-dependent protein catabolic process 8.7135E-3 5 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

serine hydrolase activity 3.9273E-5 5 13 2 6292
adenine deaminase activity 7.9466E-4 5 1 1 6292
carboxypeptidase C activity 1.5888E-3 5 2 1 6292
serine-type endopeptidase activity 3.1756E-3 5 4 1 6292
serine-type peptidase activity 4.7604E-3 5 6 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle