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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin accessibility complex 3.0316E-7 2 4 2 6292
chromatin remodeling complex 2.4511E-4 2 99 2 6292
epsilon DNA polymerase complex 1.5888E-3 2 5 1 6292
DNA polymerase complex 3.1764E-3 2 10 1 6292
nuclear replisome 5.7138E-3 2 18 1 6292
replisome 5.7138E-3 2 18 1 6292
nuclear replication fork 6.3477E-3 2 20 1 6292
nucleotide-excision repair complex 6.6645E-3 2 21 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin silencing at telomere 7.5032E-5 2 55 2 6292
negative regulation of gene expression, epigenetic 2.5011E-4 2 100 2 6292
gene silencing 2.5011E-4 2 100 2 6292
regulation of gene expression, epigenetic 2.5011E-4 2 100 2 6292
chromatin silencing 2.5011E-4 2 100 2 6292
negative regulation of transcription, DNA-dependent 6.1875E-4 2 157 2 6292
negative regulation of RNA metabolic process 6.2668E-4 2 158 2 6292
negative regulation of transcription 6.7534E-4 2 164 2 6292
negative regulation of gene expression 6.7534E-4 2 164 2 6292
negative regulation of macromolecule biosynthetic process 7.6927E-4 2 175 2 6292
negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 8.1399E-4 2 180 2 6292
negative regulation of nitrogen compound metabolic process 8.1399E-4 2 180 2 6292
negative regulation of biosynthetic process 8.9766E-4 2 189 2 6292
negative regulation of cellular biosynthetic process 8.9766E-4 2 189 2 6292
negative regulation of macromolecule metabolic process 9.2646E-4 2 192 2 6292
nucleosome positioning 9.5344E-4 2 3 1 6292
negative regulation of cellular metabolic process 1.0983E-3 2 209 2 6292
negative regulation of metabolic process 1.1088E-3 2 210 2 6292
negative regulation of transcription from RNA polymerase II promoter by pheromones 1.2712E-3 2 4 1 6292
negative regulation of gene-specific transcription from RNA polymerase II promoter 1.2712E-3 2 4 1 6292
negative regulation of gene-specific transcription 1.2712E-3 2 4 1 6292
negative regulation of transcription by pheromones 1.2712E-3 2 4 1 6292
negative regulation of cellular process 1.5726E-3 2 250 2 6292
negative regulation of biological process 1.6107E-3 2 253 2 6292
gene-specific transcription from RNA polymerase II promoter 3.1764E-3 2 10 1 6292
regulation of transcription by pheromones 3.1764E-3 2 10 1 6292
regulation of transcription from RNA polymerase II promoter by pheromones 3.1764E-3 2 10 1 6292
cellular response to pheromone 3.1764E-3 2 10 1 6292
regulation of gene-specific transcription from RNA polymerase II promoter 3.1764E-3 2 10 1 6292
regulation of transcription, DNA-dependent 3.2288E-3 2 358 2 6292
regulation of RNA metabolic process 3.3198E-3 2 363 2 6292
regulation of transcription 3.7155E-3 2 384 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
leading strand elongation 4.7627E-3 2 15 1 6292
regulation of gene-specific transcription 4.7627E-3 2 15 1 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
lagging strand elongation 5.7138E-3 2 18 1 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
chromatin assembly 6.0308E-3 2 19 1 6292
cellular response to organic substance 6.3477E-3 2 20 1 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
transcription 7.6839E-3 2 552 2 6292
nucleosome organization 9.1975E-3 2 29 1 6292
DNA strand elongation 9.8303E-3 2 31 1 6292
DNA strand elongation involved in DNA replication 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

double-stranded DNA binding 7.2981E-3 2 23 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle