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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

origin recognition complex 2.2727E-6 3 6 2 6292
nuclear origin of replication recognition complex 2.2727E-6 3 6 2 6292
pre-replicative complex 1.8163E-5 3 16 2 6292
protein-DNA complex 2.4051E-4 3 57 2 6292
nuclear chromosome part 2.6674E-3 3 190 2 6292
non-membrane-bounded organelle 3.5313E-3 3 959 3 6292
intracellular non-membrane-bounded organelle 3.5313E-3 3 959 3 6292
nuclear chromosome 3.8286E-3 3 228 2 6292
chromosomal part 4.1335E-3 3 237 2 6292
nucleoplasm part 4.414E-3 3 245 2 6292
nucleoplasm 5.1161E-3 3 264 2 6292
chromosome 5.5058E-3 3 274 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

pre-replicative complex assembly 1.1809E-5 3 13 2 6292
chromatin silencing at silent mating-type cassette 7.9771E-5 3 33 2 6292
DNA replication initiation 7.9771E-5 3 33 2 6292
protein-DNA complex assembly 1.1188E-4 3 39 2 6292
DNA-dependent DNA replication 4.9913E-4 3 82 2 6292
negative regulation of gene expression, epigenetic 7.4253E-4 3 100 2 6292
chromatin silencing 7.4253E-4 3 100 2 6292
gene silencing 7.4253E-4 3 100 2 6292
regulation of gene expression, epigenetic 7.4253E-4 3 100 2 6292
DNA replication 1.1227E-3 3 123 2 6292
negative regulation of transcription, DNA-dependent 1.8258E-3 3 157 2 6292
negative regulation of RNA metabolic process 1.849E-3 3 158 2 6292
negative regulation of gene expression 1.9912E-3 3 164 2 6292
negative regulation of transcription 1.9912E-3 3 164 2 6292
negative regulation of macromolecule biosynthetic process 2.2655E-3 3 175 2 6292
negative regulation of nitrogen compound metabolic process 2.3959E-3 3 180 2 6292
negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3959E-3 3 180 2 6292
cellular macromolecular complex assembly 2.449E-3 3 182 2 6292
negative regulation of biosynthetic process 2.6396E-3 3 189 2 6292
negative regulation of cellular biosynthetic process 2.6396E-3 3 189 2 6292
negative regulation of macromolecule metabolic process 2.7234E-3 3 192 2 6292
negative regulation of cellular metabolic process 3.2225E-3 3 209 2 6292
negative regulation of metabolic process 3.2531E-3 3 210 2 6292
negative regulation of cellular process 4.5939E-3 3 250 2 6292
negative regulation of biological process 4.7035E-3 3 253 2 6292
cellular macromolecular complex subunit organization 4.9265E-3 3 259 2 6292
macromolecular complex assembly 5.7868E-3 3 281 2 6292
cellular macromolecule biosynthetic process 6.7003E-3 3 1187 3 6292
macromolecule biosynthetic process 6.7343E-3 3 1189 3 6292
gene expression 8.4626E-3 3 1283 3 6292
macromolecular complex subunit organization 9.2699E-3 3 357 2 6292
regulation of transcription, DNA-dependent 9.321E-3 3 358 2 6292
regulation of RNA metabolic process 9.5782E-3 3 363 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA replication origin binding 1.1809E-5 3 13 2 6292
sequence-specific DNA binding 1.8474E-4 3 50 2 6292
DNA binding 4.8144E-3 3 256 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle