YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 15 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
DIP2
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • ECM16
  • mitochondrion
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • RNA helicase activity
  • EMG1
  • nucleus
  • cytoplasm
  • nuclear microtubule
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • ribosomal small subunit biogenesis
  • ribosome biogenesis
  • molecular_function
  • IMP3
  • small-subunit processome
  • nuclear outer membrane
  • small nucleolar ribonucleoprotein complex
  • rRNA modification
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • IMP4
  • small-subunit processome
  • nuclear outer membrane
  • small nucleolar ribonucleoprotein complex
  • rRNA modification
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • rRNA primary transcript binding
  • MPP10
  • nucleus
  • small-subunit processome
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • molecular_function
  • NOC4
  • nucleus
  • Noc4p-Nop14p complex
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • ribosomal small subunit biogenesis
  • ribosome biogenesis
  • molecular_function
  • NOP1
  • nuclear outer membrane
  • nucleolus
  • ribosome
  • small nucleolar ribonucleoprotein complex
  • rRNA modification
  • RNA methylation
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • ribosomal large subunit assembly
  • snoRNA 3'-end processing
  • methyltransferase activity
  • NOP14
  • mitochondrion
  • Noc4p-Nop14p complex
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosomal small subunit biogenesis
  • ribosome biogenesis
  • snoRNA binding
  • SOF1
  • nuclear outer membrane
  • nucleolus
  • small nuclear ribonucleoprotein complex
  • small nucleolar ribonucleoprotein complex
  • rRNA modification
  • maturation of SSU-rRNA
  • snoRNA binding
  • UTP15
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • UTP20
  • cytoplasm
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • rRNA processing
  • snoRNA binding
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • UTP6
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • snoRNA binding
  • UTP7
  • nuclear outer membrane
  • small nucleolar ribonucleoprotein complex
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    small nucleolar ribonucleoprotein complex 1.602E-30 15 72 15 6292
    nuclear outer membrane 2.1029E-18 15 86 11 6292
    nuclear membrane 8.4948E-18 15 97 11 6292
    ribonucleoprotein complex 3.9839E-17 15 514 15 6292
    outer membrane 8.4548E-15 15 178 11 6292
    organelle outer membrane 8.4548E-15 15 178 11 6292
    nuclear envelope 2.9452E-14 15 199 11 6292
    nuclear membrane-endoplasmic reticulum network 1.626E-13 15 232 11 6292
    endomembrane system 6.1584E-11 15 398 11 6292
    nucleolus 1.9043E-10 15 211 9 6292
    envelope 8.1456E-10 15 505 11 6292
    organelle envelope 8.1456E-10 15 505 11 6292
    macromolecular complex 1.5857E-9 15 1635 15 6292
    preribosome 9.7994E-9 15 34 5 6292
    membrane part 1.4865E-8 15 662 11 6292
    organelle membrane 2.3827E-8 15 692 11 6292
    nuclear lumen 1.6291E-7 15 453 9 6292
    nuclear part 2.16E-7 15 1103 12 6292
    small-subunit processome 2.1836E-7 15 6 3 6292
    organelle lumen 4.0779E-6 15 660 9 6292
    intracellular organelle lumen 4.0779E-6 15 660 9 6292
    Noc4p-Nop14p complex 5.3053E-6 15 2 2 6292
    membrane-enclosed lumen 6.689E-6 15 700 9 6292
    membrane 7.3375E-6 15 1198 11 6292
    Noc complex 5.2834E-5 15 5 2 6292
    preribosome, small subunit precursor 7.9142E-5 15 6 2 6292
    non-membrane-bounded organelle 8.9781E-5 15 959 9 6292
    intracellular non-membrane-bounded organelle 8.9781E-5 15 959 9 6292
    nucleus 2.0944E-4 15 2041 12 6292
    intracellular organelle part 6.8752E-4 15 2282 12 6292
    organelle part 6.8752E-4 15 2282 12 6292
    90S preribosome 7.0676E-4 15 17 2 6292
    nucleolar part 4.9503E-3 15 45 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    maturation of SSU-rRNA 6.2723E-23 15 59 12 6292
    rRNA processing 5.5904E-21 15 128 13 6292
    rRNA metabolic process 1.4076E-20 15 137 13 6292
    ribosome biogenesis 9.5036E-20 15 346 15 6292
    ribonucleoprotein complex biogenesis 3.1258E-19 15 374 15 6292
    ncRNA processing 5.9838E-18 15 215 13 6292
    ncRNA metabolic process 6.3905E-17 15 257 13 6292
    cellular component biogenesis 3.7988E-15 15 694 15 6292
    RNA processing 1.0988E-14 15 380 13 6292
    RNA metabolic process 1.6244E-9 15 954 13 6292
    rRNA modification 6.2778E-8 15 18 4 6292
    gene expression 6.9534E-8 15 1283 13 6292
    nucleic acid metabolic process 2.3794E-7 15 1415 13 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 8.4424E-7 15 1566 13 6292
    cellular nitrogen compound metabolic process 3.8521E-6 15 1770 13 6292
    nitrogen compound metabolic process 4.4553E-6 15 1791 13 6292
    RNA modification 1.7486E-5 15 70 4 6292
    ribosomal small subunit biogenesis 2.7585E-5 15 26 3 6292
    cellular macromolecule metabolic process 8.6671E-5 15 2285 13 6292
    macromolecule metabolic process 1.2073E-4 15 2349 13 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.0759E-4 15 13 2 6292
    primary metabolic process 1.4206E-3 15 2896 13 6292
    cellular metabolic process 2.4151E-3 15 3033 13 6292
    metabolic process 3.8068E-3 15 3157 13 6292
    cellular process 5.0732E-3 15 4426 15 6292
    ncRNA 5'-end processing 7.136E-3 15 3 1 6292
    endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 7.136E-3 15 3 1 6292
    endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 7.136E-3 15 3 1 6292
    rRNA 5'-end processing 7.136E-3 15 3 1 6292
    RNA 5'-end processing 7.136E-3 15 3 1 6292
    maturation of 5.8S rRNA 9.5041E-3 15 4 1 6292
    cleavage involved in rRNA processing 9.5041E-3 15 4 1 6292
    maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9.5041E-3 15 4 1 6292
    endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9.5041E-3 15 4 1 6292
    endonucleolytic cleavage involved in rRNA processing 9.5041E-3 15 4 1 6292
    endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9.5041E-3 15 4 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    snoRNA binding 2.3379E-18 15 31 9 6292
    RNA binding 9.3456E-10 15 367 10 6292
    nucleic acid binding 3.0323E-7 15 666 10 6292
    binding 1.4204E-4 15 1294 10 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle