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Protein Overview: RFC2_ARATH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..333] PSI-BLAST 56.69897 Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA)

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • DNA clamp loader activity
  • 6.51495346697904 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
  • 6.40748863504898 bayes_pls_golite062009
  • DNA-dependent ATPase activity
  • 2.72462789867829 bayes_pls_golite062009
  • binding
  • 2.64537357529343 bayes_pls_golite062009
  • mismatched DNA binding
  • 2.51625633651862 bayes_pls_golite062009
  • DNA helicase activity
  • 2.2817164193758 bayes_pls_golite062009
  • nucleic acid binding
  • 2.21184938313192 bayes_pls_golite062009
  • pyrophosphatase activity
  • 2.13284212711072 bayes_pls_golite062009
  • DNA binding
  • 1.94055378599526 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
  • 1.88455339138556 bayes_pls_golite062009
  • 1.85506769032946 bayes_pls_golite062009
  • transcription regulator activity
  • 1.83584389083042 bayes_pls_golite062009
  • helicase activity
  • 1.70242731830224 bayes_pls_golite062009
  • guanine/thymine mispair binding
  • 1.69026972999845 bayes_pls_golite062009
  • DNA insertion or deletion binding
  • 1.68890613599528 bayes_pls_golite062009
  • RNA helicase activity
  • 1.63960194106079 bayes_pls_golite062009
  • DNA replication origin binding
  • 1.62491387774159 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
  • 1.61735400124552 bayes_pls_golite062009
  • RNA-dependent ATPase activity
  • 1.60404584546501 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.2539059700735 bayes_pls_golite062009
  • purine ribonucleotide binding
  • 1.21658213854831 bayes_pls_golite062009
  • ribonucleotide binding
  • 1.21652144153182 bayes_pls_golite062009
  • purine nucleotide binding
  • 1.21571071905795 bayes_pls_golite062009
  • nucleotide binding
  • 1.20347573865566 bayes_pls_golite062009
  • ATP-dependent helicase activity
  • 1.19311444180077 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
  • 1.19311444180077 bayes_pls_golite062009
  • motor activity
  • 1.14667913749579 bayes_pls_golite062009
  • microtubule motor activity
  • 1.1277447806079 bayes_pls_golite062009
  • double-stranded DNA binding
  • 1.117585097627 bayes_pls_golite062009
  • catalytic activity
  • 1.00104173493322 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
  • 0.971476020912368 bayes_pls_golite062009
  • DNA polymerase activity
  • 0.928091843881235 bayes_pls_golite062009
  • transcription factor activity
  • 0.697256579145077 bayes_pls_golite062009
  • transcription repressor activity
  • 0.677612020025357 bayes_pls_golite062009
  • guanyl nucleotide binding
  • 0.656009904481476 bayes_pls_golite062009
  • guanyl ribonucleotide binding
  • 0.64416740142962 bayes_pls_golite062009
  • GTP binding
  • 0.643084645864898 bayes_pls_golite062009
  • single base insertion or deletion binding
  • 0.629563765934841 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.568457189190858 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 0.500462538667228 bayes_pls_golite062009
  • GTPase activity
  • 0.406399103964327 bayes_pls_golite062009
  • DNA strand annealing activity
  • 0.283577486331079 bayes_pls_golite062009
  • protein binding
  • 0.170837278876362 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.147579541298736 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.111293884322157 bayes_pls_golite062009
  • structural constituent of ribosome
  • 0.089234257580272 bayes_pls_golite062009
  • 3'-5' DNA helicase activity
  • 0.0769112340058804 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
  • 0.0320943071400439 bayes_pls_golite062009
  • histone acetyltransferase activity
  • 0.0320943071400439 bayes_pls_golite062009
  • double-strand/single-strand DNA junction binding
  • 0.0136229525922795 bayes_pls_golite062009
  • actin binding
  • 0.00482938540552702 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle