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Protein Overview: SPBC1861.07

General Information:
Name(s) found: SPBC1861.07 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • elongin C [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 97 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    transcription elongation factor complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of RNA elongation [ICLink to PubMed article]
    RNA elongation from RNA polymerase II promoter [ISSLink to PubMed article]
    protein ubiquitination [ISSLink to PubMed article]
    ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: transcription elongation regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEYVRLIS GDGFVFILEK EIACLSGTIR AILNEGIFSE AQKNECTFPD IRATLLEKVC  60
   61 EYLHYNYRYK NQLDIPKFDI PPEMVLELLV TAEYLEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] PSI-BLAST 28.045757 Elongin C

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription elongation regulator activity
    		•  7.53002625989446 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  6.78934422958647 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  6.52079977531395 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  5.78412146341235 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  4.95822114853319 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.03732153795237 bayes_pls_golite062009
  • DNA binding
    		•  3.26500171477452 bayes_pls_golite062009
  • binding
    		•  3.25487903155187 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.97922606919142 bayes_pls_golite062009
  • transcription factor activity
    		•  2.57500386784378 bayes_pls_golite062009
  • cation channel activity
    		•  1.92125363534463 bayes_pls_golite062009
  • gated channel activity
    		•  1.88630914691725 bayes_pls_golite062009
  • ion channel activity
    		•  1.7702699395278 bayes_pls_golite062009
  • ligase activity
    		•  1.75579073151181 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.71028791830657 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  1.61397056596603 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  1.5869038359926 bayes_pls_golite062009
  • channel activity
    		•  1.5869038359926 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  1.43888140814503 bayes_pls_golite062009
  • protein binding
    		•  1.40851309733871 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  1.29999209316376 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  1.26333187190685 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.933012980583336 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.784594789263781 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  0.318894446962849 bayes_pls_golite062009
  • potassium channel activity
    		•  0.288501096353748 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.189580737604762 bayes_pls_golite062009
  • catalytic activity
    		•  0.112500532859479 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.033499769837058 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle