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Protein Overview: otu1

General Information:
Name(s) found: otu1 / SPAC24C9.14 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • ubiquitin-specific protease [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 329 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: protein deubiquitination [ISSLink to PubMed article]
    proteasomal ubiquitin-dependent protein catabolic process [NASLink to PubMed article]
    Molecular Function: ubiquitin-specific protease activity [ISSLink to PubMed article]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLRLRLKY ENQSAVETVE ANATVGSFLD LVAAKFSLPR NSIALKFGFP PQDIPLVNSD  60
   61 VPLSTLVSSG QQILVLKNAA TSFSTNEPAK PPIPNAATKP TFPPQTEISN PPAVSHQSKN 120
  121 TSQDPPYVST PIGDIALRVM PDDNSCLFRA LSKPLGFSPY ELREIVANQV LSNPDIYSTA 180
  181 ILGKPSIEYA SWIRKETSWG GYIELSILSS HFGVEICSVD VKTGRVDSYN PQPATGQRTY 240
  241 IVYSGIHYDL AALAAVLWDT DVDVVLFDAS DVTITPYVQQ LASLLKNMHY YTDTASFSIR 300
  301 CTICGTGLVG EKDATAHALA TGHTQFGEY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] FFAS03 1.25 Bud emergence mediator Bemp1
    2 View Details [113..255] PSI-BLAST 18.522879 Structure of Otubain-2
    3 View Details [256..329] FFAS03 1.3 Solution Structure of a Human C2H2-type Zinc Finger Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.21864685713998 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.24290839691082 bayes_pls_golite062009
  • protein kinase activity
    		•  1.16090501968072 bayes_pls_golite062009
  • kinase activity
    		•  1.13491087747775 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  1.02766102100178 bayes_pls_golite062009
  • protein binding
    		•  0.989073783870014 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.931601886287953 bayes_pls_golite062009
  • transferase activity
    		•  0.533092562154647 bayes_pls_golite062009
  • hydrolase activity
    		•  0.383621648094138 bayes_pls_golite062009
  • catalytic activity
    		•  0.202719107986908 bayes_pls_golite062009
    2
    Term Confidence Notes
  • cysteine-type peptidase activity
    		•  6.54685807643041 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
    		•  6.39247995905454 bayes_pls_golite062009
  • ubiquitin-specific protease activity
    		•  5.91394445088241 bayes_pls_golite062009
  • ubiquitin thiolesterase activity
    		•  4.1832081096766 bayes_pls_golite062009
  • peptidase activity
    		•  3.28868056127375 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.01472402774099 bayes_pls_golite062009
  • thiolester hydrolase activity
    		•  2.96735553959103 bayes_pls_golite062009
  • SUMO-specific protease activity
    		•  2.65263825059319 bayes_pls_golite062009
  • hydrolase activity
    		•  2.29464693834116 bayes_pls_golite062009
  • endopeptidase activity
    		•  2.26699762664334 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.13534310479552 bayes_pls_golite062009
  • cysteine-type endopeptidase activity
    		•  1.95802900199539 bayes_pls_golite062009
  • DNA binding
    		•  1.95013248594294 bayes_pls_golite062009
  • binding
    		•  1.92046698500094 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.74961503597682 bayes_pls_golite062009
  • transcription factor activity
    		•  1.20242512567523 bayes_pls_golite062009
  • catalytic activity
    		•  1.05972260874031 bayes_pls_golite062009
  • protein binding
    		•  0.874003454509364 bayes_pls_golite062009
  • NEDD8-specific protease activity
    		•  0.687958315289315 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.467924587720185 bayes_pls_golite062009
  • calcium-dependent cysteine-type endopeptidase activity
    		•  0.196538841514154 bayes_pls_golite062009
  • transferase activity
    		•  0.0852393573521809 bayes_pls_golite062009
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  4.47951889934838 bayes_pls_golite062009
  • DNA binding
    		•  4.31051339571017 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.04689255235626 bayes_pls_golite062009
  • transcription factor activity
    		•  3.28758716579796 bayes_pls_golite062009
  • binding
    		•  2.99742524370422 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.05542379535543 bayes_pls_golite062009
  • transcription activator activity
    		•  1.97757778483124 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.44763794968807 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.26862497534835 bayes_pls_golite062009
  • transcription factor binding
    		•  1.23738346570539 bayes_pls_golite062009
  • chromatin binding
    		•  1.10179307236186 bayes_pls_golite062009
  • protein binding
    		•  0.952480850696098 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.776754909146767 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.627794176881836 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle