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Protein Overview: SPAC3G6.11

General Information:
Name(s) found: SPAC3G6.11 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • ATP-dependent DNA helicase Chl1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 844 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: mitotic sister chromatid segregation [ISSLink to PubMed article]
    DNA recombination [NASLink to PubMed article]
    chromatin silencing [NASLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    ATP binding [IEA]
    ATP-dependent DNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHSKEVKFK TNFHHPYTPY DIQLEFMRSL YSSISDGKIG IFESPTGTGK SLSLICASLT  60
   61 WLDEHGGVLL EDNEKSNDNK SNTSSKIPDW VLEQDLKIQK DLVKETHARL EQRLEEIRKR 120
  121 NQSRKNQMSN NSTTYHRETK RRNINAEAST SDNCNNSNTS VDPMDEYLVT AEYTMPSTSE 180
  181 QSEDLFNNGY SSKVSELLRK LSPDNEKPPI VQKIYFTSRT HSQLQQLVQE IKKLNNQTFS 240
  241 TPIRVVSLAS RKNLCINNEV RKLRPTSALN EKCIELQGSA HKCPFLQDNT QLWDFRDEAL 300
  301 AEIMDIEELV ELGQRLKVCP YYGTREAVDS AQIVTLPYPL LLQESARNAL NLTLKDNICI 360
  361 IDEAHNLIDA ICSMHSSSIS FRQVCIAETQ LQQYFLRFEK RLNGNNRMHI KQLIKVVYNL 420
  421 KSFFLNCLET NTNSKVINVD SLLVSNGADQ INLHHLSEYL NVSKLARKVD GYTKYMHSLG 480
  481 TQELESLNDL RSERFSNGNG YEEDPYTPVL MQLESFLLNI ANPAPEGKLF YEKQTGDNPY 540
  541 LKYLLLDPSK HVEILTEQCR SVNLAGGTMS PIDDFITLLF SDEQSRILPF SCDHIVPPEN 600
  601 ITTILVSQGP AGVPFEFTHK RKDDENLLKD LGRTFQNFIS IIPDGVVVFF PSFAFLQQAV 660
  661 KVWEMNGITN RLNAKKPLFI ESKDFGDNPL DTFEHYKQSV DAGLSGMLFS VIGGRLSEGI 720
  721 NFSDKLGRAV MVVGMPFPNS QDVEWQAKVS YVEEKAKEKG INAKQASQEF YENTCMRAVN 780
  781 QSIGRAIRHR DDYASIILLD SRYNRSSIQR KLPNWLSKNI HSSPNFGPAI RQLATFFRAK 840
  841 KMCD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] MSA 2.204989 View MSA. No confident structure predictions are available.
    2 View Details [152..844] FFAS03 1.17 No description for 2p6rA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  2.86956975871176 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.66128379748011 bayes_pls_golite062009
  • binding
    		•  2.5815673740955 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  2.55362409397402 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  2.51056345830226 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.48860356580237 bayes_pls_golite062009
  • hydrolase activity
    		•  2.37720125218765 bayes_pls_golite062009
  • dATP binding
    		•  2.37560890131957 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.12472659433935 bayes_pls_golite062009
  • DNA binding
    		•  2.11486163652443 bayes_pls_golite062009
  • DNA helicase activity
    		•  2.07805757910215 bayes_pls_golite062009
  • endonuclease activity
    		•  1.97944996839216 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.86107760494079 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.67733655597151 bayes_pls_golite062009
  • helicase activity
    		•  1.47239452959713 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.43490386780955 bayes_pls_golite062009
  • purine deoxyribonucleotide binding
    		•  1.40772331673826 bayes_pls_golite062009
  • adenyl deoxyribonucleotide binding
    		•  1.40772331673826 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.40594009629203 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.38650114394757 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.372924601535 bayes_pls_golite062009
  • double-strand/single-strand DNA junction binding
    		•  1.33667679963048 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  1.29622458867159 bayes_pls_golite062009
  • protein binding
    		•  1.25232424749674 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.16901233264734 bayes_pls_golite062009
  • protein-DNA loading ATPase activity
    		•  1.08879865673064 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.991867487042149 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.962068859908115 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.962068859908115 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • motor activity
    		•  0.934327429601554 bayes_pls_golite062009
  • transcription factor activity
    		•  0.927390204819289 bayes_pls_golite062009
  • DNA clamp loader activity
    		•  0.921329005784985 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.908099102618053 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.49639867125315 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.482433345604081 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  0.338954117046181 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  0.338954117046181 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.283324779613939 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.200972330701242 bayes_pls_golite062009
  • mismatched DNA binding
    		•  0.143486155092556 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.100226648459719 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0988428757344488 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K9 specific)
    		•  0.0566193386200338 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle